Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq85 181 1e-40
seq542 114 1e-20
seq94 93.3 4e-14
>seq85
Length=153405
Score = 181 bits (200), Expect = 1e-40
Identities = 821/1291 (64%), Gaps = 34/1291 (3%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || ||||| |||| || || || ||| ||||| |||| ||||||| ||
Sbjct 96772 ACCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAG 96713
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| |||||||| || || ||||||| || | || || ||||| |||| | ||
Sbjct 96712 CACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGC 96653
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687
|| || || | ||||| ||||||| ||||||||||||| | ||||||||||| ||
Sbjct 96652 GAGTTGCGCACGCCGTGCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCA 96593
Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747
||||| | ||||||||| ||| |||| | || ||| | | | || || ||
Sbjct 96592 CTAGGGGTAACGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCA 96533
Query 138748 TACGAATCGTATACACCAAACTC---TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804
|| | ||| ||| ||| ||| || | |||| || || ||| |
Sbjct 96532 TAGGTGGAGTAAGTACC---CTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCG 96476
Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864
| ||| || || ||| ||||||| || || ||||||||||| |||| | |||
Sbjct 96475 TGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGACTCGAAAGGC 96416
Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924
||||| || ||| || ||||| || || || || || || || | ||||||||
Sbjct 96415 ATGCGTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGA 96356
Query 138925 CGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTT 138980
|||| || ||| ||| | || || | ||| || | ||| |||||||| ||
Sbjct 96355 CGCA----TGTTGCTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCG 96300
Query 138981 GTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGC 139039
|| | || |||||||||||||| || | | | | | | | | |||||||| |
Sbjct 96299 ATTCAGGTTACGCACGACCACCTTGGTGATCT-CGTGCAGCTTCTGGAAATCGTACTCTC 96241
Query 139040 CCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACA 139099
| ||||| |||||| | | || | || | | |||||||| |||||| |
Sbjct 96240 CTTTGTTGTAGTCGACAAAG--GA-----TGGT--AGGGCTAGCGAGGCTAGGTTGCATA 96190
Query 139100 CCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGA 139159
| || || || ||||| ||| ||| |||| ||||| | || | ||| | ||
Sbjct 96189 CGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGA 96130
Query 139160 TCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACG 139219
| || |||| |||| || ||||| || ||| || || || ||||| ||||| | |
Sbjct 96129 TAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATG 96070
Query 139220 GTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTT 139279
| |||| || || || | ||| | |||| | ||| | | || | ||
Sbjct 96069 GGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATGG 96010
Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGT 139339
| | | | | | || | ||||||||| || || || | ||||| || ||||
Sbjct 96009 TAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGT 95950
Query 139340 AGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCT 139399
|| |||| || | | |||| | ||| |||||||| | ||| | ||||| |
Sbjct 95949 AGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTT 95890
Query 139400 TGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCT 139459
||| ||| ||||||||||||| |||||||||| || | | || ||| || ||
Sbjct 95889 CGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAA 95830
Query 139460 TATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519
| || ||| || ||| || | |||||| || || || || |||||||| |
Sbjct 95829 TCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACG 95770
Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTA 139576
| ||||| || ||||| | || || || ||| ||||| || ||||||| ||
Sbjct 95769 GCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGG 95710
Query 139577 CAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTAC 139636
||| || ||||| || |||| ||| || | | ||| | | || |||||||||| |
Sbjct 95709 CAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAG 95650
Query 139637 GGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693
||| | | || || |||| || || || | ||||| |||||| | |
Sbjct 95649 CAATGTACGAGCCAGTG---GCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCA 95593
Query 139694 ATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753
||||| || | | | ||| | || ||||| ||||| |||||||||||||
Sbjct 95592 TCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCT 95533
Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTG 139784
||| || || ||||| ||||| || ||
Sbjct 95532 TCATATCAACTAGGAAGCACGACGATAGCTG 95502
>seq542
Length=123657
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || || || || || | ||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || |||
Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || || ||||||||||| | | | | || || || |||
Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||||||||| ||||| ||||| |||| |||| |||| || |||
Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGC 107374
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || ||||| || ||| | |
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||| || ||||| || || || ||||| || ||
Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || || || || || ||||||||||| | | |||| || || |||
Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || || |||| |||| |||| || ||
Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145
>seq94
Length=134607
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || || ||||| || ||||| ||||| || || || |
Sbjct 33950 GATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 34009
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||| || || || || || || || |||||
Sbjct 34010 GGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 34069
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || ||||||| || || || |||||||||||| | | | |||| || || ||
Sbjct 34070 GCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 34129
Query 24883 CATTCAAAAGG 24893
||| || ||||
Sbjct 34130 CATCCAGAAGG 34140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894445093080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |