Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq85 181 1e-40 seq542 114 1e-20 seq94 93.3 4e-14 >seq85 Length=153405 Score = 181 bits (200), Expect = 1e-40 Identities = 821/1291 (64%), Gaps = 34/1291 (3%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| |||| || || || ||| ||||| |||| ||||||| || Sbjct 96772 ACCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAG 96713 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| || || ||||||| || | || || ||||| |||| | || Sbjct 96712 CACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGC 96653 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || || || | ||||| ||||||| ||||||||||||| | ||||||||||| || Sbjct 96652 GAGTTGCGCACGCCGTGCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCA 96593 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCG 138747 ||||| | ||||||||| ||| |||| | || ||| | | | || || || Sbjct 96592 CTAGGGGTAACGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCA 96533 Query 138748 TACGAATCGTATACACCAAACTC---TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804 || | ||| ||| ||| ||| || | |||| || || ||| | Sbjct 96532 TAGGTGGAGTAAGTACC---CTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCG 96476 Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864 | ||| || || ||| ||||||| || || ||||||||||| |||| | ||| Sbjct 96475 TGGTAGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGACTCGAAAGGC 96416 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924 ||||| || ||| || ||||| || || || || || || || | |||||||| Sbjct 96415 ATGCGTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGA 96356 Query 138925 CGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTT 138980 |||| || ||| ||| | || || | ||| || | ||| |||||||| || Sbjct 96355 CGCA----TGTTGCTGTTGTGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCG 96300 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGC 139039 || | || |||||||||||||| || | | | | | | | | |||||||| | Sbjct 96299 ATTCAGGTTACGCACGACCACCTTGGTGATCT-CGTGCAGCTTCTGGAAATCGTACTCTC 96241 Query 139040 CCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACA 139099 | ||||| |||||| | | || | || | | |||||||| |||||| | Sbjct 96240 CTTTGTTGTAGTCGACAAAG--GA-----TGGT--AGGGCTAGCGAGGCTAGGTTGCATA 96190 Query 139100 CCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGA 139159 | || || || ||||| ||| ||| |||| ||||| | || | ||| | || Sbjct 96189 CGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGA 96130 Query 139160 TCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACG 139219 | || |||| |||| || ||||| || ||| || || || ||||| ||||| | | Sbjct 96129 TAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATG 96070 Query 139220 GTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTT 139279 | |||| || || || | ||| | |||| | ||| | | || | || Sbjct 96069 GGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATGG 96010 Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGT 139339 | | | | | | || | ||||||||| || || || | ||||| || |||| Sbjct 96009 TAAGACGGCCACGGCCTTCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGT 95950 Query 139340 AGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCT 139399 || |||| || | | |||| | ||| |||||||| | ||| | ||||| | Sbjct 95949 AGCAATCAGCTAGTCCAGGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTT 95890 Query 139400 TGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCT 139459 ||| ||| ||||||||||||| |||||||||| || | | || ||| || || Sbjct 95889 CGACACGCTTCATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAA 95830 Query 139460 TATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519 | || ||| || ||| || | |||||| || || || || |||||||| | Sbjct 95829 TCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACG 95770 Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTA 139576 | ||||| || ||||| | || || || ||| ||||| || ||||||| || Sbjct 95769 GCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGG 95710 Query 139577 CAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTAC 139636 ||| || ||||| || |||| ||| || | | ||| | | || |||||||||| | Sbjct 95709 CAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAG 95650 Query 139637 GGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAA 139693 ||| | | || || |||| || || || | ||||| |||||| | | Sbjct 95649 CAATGTACGAGCCAGTG---GCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCA 95593 Query 139694 ATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCT 139753 ||||| || | | | ||| | || ||||| ||||| ||||||||||||| Sbjct 95592 TCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCT 95533 Query 139754 GCATCGTGACCAGAAAGCATGACGAAAGTTG 139784 ||| || || ||||| ||||| || || Sbjct 95532 TCATATCAACTAGGAAGCACGACGATAGCTG 95502 >seq542 Length=123657 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | || Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||||||||| | | | | || || || ||| Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| ||||| ||||| |||| |||| |||| || ||| Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGC 107374 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || ||| | | Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || ||||| || || Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||||||||||| | | |||| || || ||| Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || |||| |||| |||| || || Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145 >seq94 Length=134607 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 33950 GATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 34009 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || || || || || || ||||| Sbjct 34010 GGACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCA 34069 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | | |||| || || || Sbjct 34070 GCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 34129 Query 24883 CATTCAAAAGG 24893 ||| || |||| Sbjct 34130 CATCCAGAAGG 34140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894445093080