Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq85 185 1e-40 seq7 107 3e-17 seq534 104 4e-16 seq250 100 5e-15 seq155 86.0 1e-10 >seq85 Length=153405 Score = 185 bits (204), Expect = 1e-40 Identities = 346/504 (69%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| || |||||||| |||| |||||| || Sbjct 95726 CTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATGCCGTTAGA 95667 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||||||| || | ||| | ||| | ||| || | ||| || | || Sbjct 95666 CGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACGTTCAGACC 95607 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||||||| ||||||||| | || || | |||||||| |||||||| || || Sbjct 95606 GATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAGATACCATC 95547 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGC-GGGC--GCGCCGT 2073776 || |||| ||||||| || | || ||||||||||| | || |||| ||| || Sbjct 95546 AATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGA---TAGCTGGGCCTGCGGTGT 95490 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||| || ||||| |||||||||| || ||| | ||| |||||| | ||| Sbjct 95489 GCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAGAACTTGCTTGACATGTAGTTGTA 95430 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 || ||||||| || | || |||| ||| |||| || ||| | ||| Sbjct 95429 AGTCTCGAGCACACG-GTCAACGCG--------GTC-----ACCC-CAGATGCCAACGGC 95385 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||||||||||| ||| || |||||||| | | || | ||| |||||| Sbjct 95384 CACACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCTTAAGCAGGTA 95325 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || || |||||| | |||||||||| |||| | ||| || |||| || Sbjct 95324 CGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACAAT 95265 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||| || | |||||||| Sbjct 95264 GGCAGAGTCCAGCTCTTCCTTGTG 95241 Score = 95.1 bits (104), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||| ||| ||||||| | || ||||| || || || |||||||||| Sbjct 95879 CATGAACAGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTT 95820 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| ||| || || | |||| | ||||||||||||||||||||||| Sbjct 95819 GCCGTGGTTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTA 95760 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTG 2072004 ||||||||| || ||||||| Sbjct 95759 AATGGCAAAGGCACCGGGGCGCTTG 95735 Score = 89.7 bits (98), Expect = 8e-12 Identities = 331/508 (65%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||| || ||||| |||| ||||| | | |||| || || |||||||| ||| Sbjct 97126 TGGTCGACAGTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCG 97067 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGG 2069370 |||||||| ||| | ||| || |||||| ||||| | | | ||| Sbjct 97066 GTCTTGAGACCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAGTAGGG 97007 Query 2069371 ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGAC-ATAGGGCGCGCGGTCGGCCGC 2069429 | || | ||| |||||||| |||||||| | || || | || ||||| || Sbjct 97006 TCCTTCATGTGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGC-CACGATCGGCAGC 96948 Query 2069430 CATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 ||| | | | ||| |||| | || | |||||| ||||||||| |||||||||||| Sbjct 96947 CATCTGCACAACGGT-ACGCTGA--GAAATCTCCCAGACGGTCTTGTACAGGGCCTTGAT 96891 Query 2069487 ATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCG 2069546 | |||||| | | | || | || ||||| || | | || |||| || Sbjct 96890 GT-CGGCGGGGA-TATTAGGGAT----GTTTTGGACCGAACCGTTATCCGCAATGATACG 96837 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATG---CGCT-CGACCAGGTGGC 2069602 || | | | | ||||||||| | | | || | ||| | |||||| Sbjct 96836 GTTCTTCATGGTGTCGGACCACAGGCCAAGATCGACCAGGTCACGCAGCAACCAGG---- 96781 Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 |||| || || || || || | ||||| |||||| ||||||||| ||| Sbjct 96780 GGTTAACAACCTGGAACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAG 96721 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 |||| | |||| ||||||| |||||||| || |||| ||| || ||||| | |||| Sbjct 96720 GCTCGAAGCACTCGTTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCA 96661 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTG 2069750 ||| ||||||||||||| ||||| ||| Sbjct 96660 GGAGTAGCGAGTTGCGCACGCCGTGCTG 96633 >seq7 Length=77910 Score = 107 bits (118), Expect = 3e-17 Identities = 202/293 (69%), Gaps = 7/293 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| || || ||||| ||||| ||||| | | || || ||||| Sbjct 73026 AGACCAGGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAG 72967 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| |||||||| || |||||| | ||||| |||| | | || ||| | |||| Sbjct 72966 AAGATACCCTCGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTG----GATTCTCT 72911 Query 794497 TT-GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 | | |||||||| | ||||| || ||||| | | |||| | ||||| || Sbjct 72910 GTCGCAAATCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAAT 72851 Query 794556 GGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614 |||| || |||| || | || | || ||||||| ||| || ||||| | || | Sbjct 72850 GGCGTTGAACAGGTATGTGCG-CTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGG 72792 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||| ||||||||||| || || ||||||||| || || |||||| Sbjct 72791 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAG 72739 >seq534 Length=208498 Score = 104 bits (114), Expect = 4e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 ||||||||||| | ||||| || ||||| ||||||| | | || || | ||||| || Sbjct 193632 GGCCGCCACAAACTTATCATTCTAGATGAAGCCGACTCCATGACTTCTGGTGCCCAACAA 193573 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || |||||||||| ||| ||||||| || || || || | || |||||| Sbjct 193572 GCCCTTCGCCGTACCATGGAAATATACTCCAACACAACCCGTTTCGCATTCGCGTGCAAC 193513 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | ||||||| | || || ||||| || |||||||||| || ||| Sbjct 193512 CAGTCCAACAAGATCATCGAGCCTCTACAATCGCGTTGTGCTATCTTGCGCTACGCACGC 193453 Query 2019384 CTCACCGACG 2019393 ||||| |||| Sbjct 193452 CTCACGGACG 193443 >seq250 Length=91439 Score = 100 bits (110), Expect = 5e-15 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| ||||| |||||||| | | ||| | || |||||||| || |||||| Sbjct 33381 GCCTCCAACTATCTCGATATCAAGCCTTTGTTAGATGTCGGCTGCAAGACTGTCGCCAAC 33440 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||| ||||| || || || |||||||| |||||| Sbjct 33441 ATGATCAAGGGCAAGTCTCCCGAAGAGATTCGTAAGACCTTCAACATC 33488 >seq155 Length=114398 Score = 86.0 bits (94), Expect = 1e-10 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || ||||||||||| || || ||||||||| ||||||| || ||| ||| Sbjct 12299 GTACTTGGTAACAGCCTTGGTACCTTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCAG 12240 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || ||||||||||| |||| Sbjct 12239 GATAAGACGGACACTAGTCTGGATCTCTCGGG 12208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916186723871279