Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq542 123 2e-23
seq548 105 4e-18
seq94 105 4e-18
>seq542
Length=123657
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| ||||| || | ||| |||||| |||||||| ||||| |||||| |||| | ||
Sbjct 107359 CAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTC 107300
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || |||||||| || || || ||||| | || | |||||||||||
Sbjct 107299 CTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTC 107240
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | |||||| |||| || |||||
Sbjct 107239 CTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGT 107180
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||| ||||| ||||||||||||||
Sbjct 107179 CTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 113 bits (124), Expect = 3e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || ||| |||| |||| || |||||||| || |||||
Sbjct 106882 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAA 106823
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| || | || | |||||||| || | || || ||||||
Sbjct 106822 AATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTT 106763
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | ||| || |||||| || | ||| ||||||||||| ||||||||||| ||
Sbjct 106762 GTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAAC 106703
Score = 93.3 bits (102), Expect = 3e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| |||||| || ||||| || || || ||| |||| | ||
Sbjct 106612 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCC 106553
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| |||||||| ||||| ||||||||||| | || | |||||||||||
Sbjct 106552 TCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTC 106494
>seq548
Length=140442
Score = 105 bits (116), Expect = 4e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || || ||||| || |||||||
Sbjct 35072 CCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 35131
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||||
Sbjct 35132 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT 35191
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| || | ||| |||||||| ||||| |||||||| || |
Sbjct 35192 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 35251
Query 34968 A 34968
|
Sbjct 35252 A 35252
>seq94
Length=134607
Score = 105 bits (116), Expect = 4e-18
Identities = 141/194 (73%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| |||| ||||| ||||| || |||||||
Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || ||||| || | || | |||||||| || | || || ||||| ||
Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGAC--AT- 34024
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 34023 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTG 33965
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 33964 ACGAAAATCTGCAT 33951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690573177259
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |