Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq542 109 4e-19
>seq542
Length=123657
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| || || | || |||||| |||| ||| || || || || ||||||||||| || ||
Sbjct 107376 TGGCCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCG 107317
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
| | ||||||| || || || || || ||||| | || | | || || |||||
Sbjct 107316 GATAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGG 107257
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736
||||||||||| ||||| || | || || || | || | ||||| ||| ||
Sbjct 107256 GGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCG 107197
Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| || || |||||||| | || || ||||| ||||||||
Sbjct 107196 ACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || ||| || |||| ||| || || || || || || ||||| || || |
Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || ||||| |||||||| | |||| | ||||||||||| |||
Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| || || || | || ||||| | || | ||| ||||| || |||
Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACT 106738
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780
|| || || || || || || || | ||| ||||| | |||
Sbjct 106737 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 106697
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || |||||| |||| ||| || || || || || || ||||| || || |
Sbjct 107145 CCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 107086
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || || || || ||||| | || | | ||||| ||||| |||
Sbjct 107085 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 107026
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||||| ||||| || ||| || | || || | || | || || ||| ||| ||
Sbjct 107025 ATACCCTCCTTGTCCTG-AATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAAC 106967
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || |||||||| | || || ||||| ||||||||
Sbjct 106966 CTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385216566184101
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |