Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq85 297 2e-75
seq542 102 8e-17
seq94 100 3e-16
seq548 95.1 1e-14
>seq85
Length=153405
Score = 297 bits (328), Expect = 2e-75
Identities = 1137/1758 (65%), Gaps = 63/1758 (4%)
Strand=Plus/Minus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTT 148108
|||||| |||||| ||||| |||||||| || || ||||| | ||| | ||||
Sbjct 96986 CGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCATCTGCACAACGGTACGCTG 96927
Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
||||||||| | ||||||||||| |||||| | |||| || |||
Sbjct 96926 AGAA---ATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCGGCGGGGATATTAGGGAT 96870
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228
| || ||||| ||| | ||||| || | || ||| ||| | | |||
Sbjct 96869 GTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCTTCATGGTGTCGGACCACAGGCC 96810
Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288
|| |||| ||||||| | || | | || || ||||| ||||| || || |||||
Sbjct 96809 AAGATCGACCAGGTCACGCAGCAACCAGGGGTTAACAACCTGGAACTCACCAGCCAGCAC 96750
Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| ||| | || | ||| || | || || || ||||||||||||| | |||||
Sbjct 96749 ACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGGATCTG 96690
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| ||||| || || ||||| || | || ||||||||||||| ||| | | ||
Sbjct 96689 AGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGCTGCTT 96630
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATG 148466
|| | ||| || | ||||||||||| || | || || || ||||||||||||
Sbjct 96629 GATCTGTTCCTTGAGCGAGGCCCAGTCCCACAG--GTCACTAGGGGTAACGTTCCACATG 96572
Query 148467 TCGTACTGCAGAATGCCGCG-GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTG 148525
||| ||||||| || || | | || || | ||||| || | | ||| | || |
Sbjct 96571 TCGAACTGCAGGATACCCTGAGATACAGGCGAA-CCCTCATAGGTGGAGTAAGTACCCTC 96513
Query 148526 CGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585
| || | ||||| || || || ||| ||| || |||||| || ||
Sbjct 96512 GGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 96453
Query 148586 CCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGC 148642
| |||| || || || | | |||| ||| | ||||| || || | || ||
Sbjct 96452 CTTGTTCAG-AGTGCGGGC--CTCGGCAGACTCGAAAGGCATGCGTAGGGCTAGGAAAGC 96396
Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702
||||| || ||||| || || || |||||||| || || |||||| | | | ||
Sbjct 96395 ATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTTGCTGTTGTGAGC 96336
Query 148703 GCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761
||| | | || ||||||||| ||||| || | || || ||||| |||||||
Sbjct 96335 -CTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCT 96277
Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACT---------TGTCATCTACGATGCATC 148812
| || || | ||||| | |||||||||| ||| || || | | ||
Sbjct 96276 TGGTGATCTCGTGCAGCTTCTGGAAATCGTACTCTCCTTTGTTGTAGTCGACAAAGGAT- 96218
Query 148813 GGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTA 148872
||| | ||| | |||||||| ||||| ||||| |||||| || |||| |||||| |
Sbjct 96217 GGT--AGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGA 96160
Query 148873 CGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGC 148932
||| || | ||| |||||| || ||| ||| | ||| || || ||||||||
Sbjct 96159 TGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCT 96100
Query 148933 TGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA 148992
||||||| |||||||||||||||||| | || ||| || || ||| | || | |
Sbjct 96099 TGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAA 96040
Query 148993 TGA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAG-----CGACCCTCCTG 149044
|| ||| ||| | ||| || |||| || | | || || ||
Sbjct 96039 TGGCGTACCA---CAGCTTCTGGGC-----CTTGATGGTAAGACGGCCACGGCCTTCACT 95988
Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104
|||||| |||||| ||||||| |||||||||||||||| | || || |||||
Sbjct 95987 CTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCA 95928
Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164
|| | ||||||||||| | ||| | ||| | | || |||||||| ||||||||
Sbjct 95927 CTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATC 95868
Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224
||| | ||| || || | || || || || || || ||| |||
Sbjct 95867 GGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTT 95808
Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284
|||||| | || | ||| | || |||||||||||||| | ||| | || | ||
Sbjct 95807 GCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGC 95748
Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341
|| ||||||| || ||||||||||||| ||| | ||||||| || || || |
Sbjct 95747 ACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAG 95688
Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAG-AGCTAATG--CGACTGCCGCGCGC 149398
||| || ||||||| | | |||||||| || ||| |||| ||| ||| ||
Sbjct 95687 CATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGC-AATGTACGA--GCCAGTGGC 95631
Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GT 149457
|| | ||| ||||| | ||||| |||||| | ||| ||||| || || ||
Sbjct 95630 ACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGT 95571
Query 149458 CGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCAC 149516
| | ||||| |||||| || || ||||||||| |||||| ||| | || ||||||
Sbjct 95570 CTTC-AGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATA-TCAACTAGGAAGCAC 95513
Query 149517 GAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAA 149576
|| | | || | | ||||| || ||| | ||||| ||||||||| ||
Sbjct 95512 GACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAG 95453
Query 149577 TATTT-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGAT 149635
| || || | ||| | ||| | ||||||||| ||||| | | || || |||
Sbjct 95452 AACTTGCTTGA-CATGTAGTTGTAAGTCTCGAGCACACGGTCAACGCGGTCACCCCAGAT 95394
Query 149636 GCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTT 149695
||| | ||| || ||||| | ||| |||||||| ||||| | | ||| | | ||
Sbjct 95393 GCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCTT 95334
Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755
|||| ||| ||||| |||||| |||||||||||| ||||| ||||| || |
Sbjct 95333 AAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATC 95274
Query 149756 GTGGTCAATGGCGGCGTC 149773
|| ||||||| | |||
Sbjct 95273 GTACACAATGGCAGAGTC 95256
>seq542
Length=123657
Score = 102 bits (112), Expect = 8e-17
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || || || ||| |||||| |||||||| |
Sbjct 107115 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGT--ACGTCCGTCCTCCAGCTGCTTAC 107058
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| ||||||| ||||||||||| ||||| || || |||||||| ||||| ||
Sbjct 107057 CAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACT 106998
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| || || | | || || |||| |||| ||| ||||| || ||||
Sbjct 106997 TCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAG 106938
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 106937 TCTTGACAAAGATCTGCAT 106919
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| || || || |||||||| | ||| ||||||||| ||||||||
Sbjct 106597 GTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 106538
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| |||| || || |||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 106537 GCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 106478
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
| | || | || |||| | ||| || |||| ||||| || ||||||||
Sbjct 106477 ACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTGCCGGT 106425
>seq94
Length=134607
Score = 100 bits (110), Expect = 3e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| || ||||| ||| || ||| | | | ||||| |||||||| || ||| | ||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTACCAGCGAAGAT 34080
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
|| |||||||| || || || ||||| ||||| || |||||| ||||| | ||
Sbjct 34079 CAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTC 34020
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| ||||| | || ||| || |||| ||| | || || || ||||| || || |||||
Sbjct 34019 GATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAA 33960
Query 133652 AATCTGCAT 133660
|||||||||
Sbjct 33959 AATCTGCAT 33951
>seq548
Length=140442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || || ||||||||||| || || ||||| ||||||
Sbjct 35107 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 35166
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | || | |||||| | || ||| || || | ||| | |
Sbjct 35167 TCCTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATG 35226
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| || || ||||| || || ||||||
Sbjct 35227 GTCTTACCCGTCAGGGTCTTGACGAAA 35253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417410011640
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