Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq85 297 2e-75 seq542 102 8e-17 seq94 100 3e-16 seq548 95.1 1e-14 >seq85 Length=153405 Score = 297 bits (328), Expect = 2e-75 Identities = 1137/1758 (65%), Gaps = 63/1758 (4%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTT 148108 |||||| |||||| ||||| |||||||| || || ||||| | ||| | |||| Sbjct 96986 CGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCATCTGCACAACGGTACGCTG 96927 Query 148109 TATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 ||||||||| | ||||||||||| |||||| | |||| || ||| Sbjct 96926 AGAA---ATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCGGCGGGGATATTAGGGAT 96870 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | || ||||| ||| | ||||| || | || ||| ||| | | ||| Sbjct 96869 GTTTTGGACCGAACCGTTATCCGCAATGATACGGTTCTTCATGGTGTCGGACCACAGGCC 96810 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 || |||| ||||||| | || | | || || ||||| ||||| || || ||||| Sbjct 96809 AAGATCGACCAGGTCACGCAGCAACCAGGGGTTAACAACCTGGAACTCACCAGCCAGCAC 96750 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || ||| | || | ||| || | || || || ||||||||||||| | ||||| Sbjct 96749 ACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGGATCTG 96690 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | ||||| || || ||||| || | || ||||||||||||| ||| | | || Sbjct 96689 AGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGCTGCTT 96630 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATG 148466 || | ||| || | ||||||||||| || | || || || |||||||||||| Sbjct 96629 GATCTGTTCCTTGAGCGAGGCCCAGTCCCACAG--GTCACTAGGGGTAACGTTCCACATG 96572 Query 148467 TCGTACTGCAGAATGCCGCG-GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTG 148525 ||| ||||||| || || | | || || | ||||| || | | ||| | || | Sbjct 96571 TCGAACTGCAGGATACCCTGAGATACAGGCGAA-CCCTCATAGGTGGAGTAAGTACCCTC 96513 Query 148526 CGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 | || | ||||| || || || ||| ||| || |||||| || || Sbjct 96512 GGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 96453 Query 148586 CCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGC 148642 | |||| || || || | | |||| ||| | ||||| || || | || || Sbjct 96452 CTTGTTCAG-AGTGCGGGC--CTCGGCAGACTCGAAAGGCATGCGTAGGGCTAGGAAAGC 96396 Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702 ||||| || ||||| || || || |||||||| || || |||||| | | | || Sbjct 96395 ATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTTGCTGTTGTGAGC 96336 Query 148703 GCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 ||| | | || ||||||||| ||||| || | || || ||||| ||||||| Sbjct 96335 -CTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCT 96277 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACT---------TGTCATCTACGATGCATC 148812 | || || | ||||| | |||||||||| ||| || || | | || Sbjct 96276 TGGTGATCTCGTGCAGCTTCTGGAAATCGTACTCTCCTTTGTTGTAGTCGACAAAGGAT- 96218 Query 148813 GGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTA 148872 ||| | ||| | |||||||| ||||| ||||| |||||| || |||| |||||| | Sbjct 96217 GGT--AGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGA 96160 Query 148873 CGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGC 148932 ||| || | ||| |||||| || ||| ||| | ||| || || |||||||| Sbjct 96159 TGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCT 96100 Query 148933 TGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA 148992 ||||||| |||||||||||||||||| | || ||| || || ||| | || | | Sbjct 96099 TGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAA 96040 Query 148993 TGA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAG-----CGACCCTCCTG 149044 || ||| ||| | ||| || |||| || | | || || || Sbjct 96039 TGGCGTACCA---CAGCTTCTGGGC-----CTTGATGGTAAGACGGCCACGGCCTTCACT 95988 Query 149045 CTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||||| |||||| ||||||| |||||||||||||||| | || || ||||| Sbjct 95987 CTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCA 95928 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || | ||||||||||| | ||| | ||| | | || |||||||| |||||||| Sbjct 95927 CTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATC 95868 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 ||| | ||| || || | || || || || || || ||| ||| Sbjct 95867 GGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTT 95808 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 |||||| | || | ||| | || |||||||||||||| | ||| | || | || Sbjct 95807 GCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGC 95748 Query 149285 GCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||||||| || ||||||||||||| ||| | ||||||| || || || | Sbjct 95747 ACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAG 95688 Query 149342 CATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAG-AGCTAATG--CGACTGCCGCGCGC 149398 ||| || ||||||| | | |||||||| || ||| |||| ||| ||| || Sbjct 95687 CATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGC-AATGTACGA--GCCAGTGGC 95631 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GT 149457 || | ||| ||||| | ||||| |||||| | ||| ||||| || || || Sbjct 95630 ACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGT 95571 Query 149458 CGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCAC 149516 | | ||||| |||||| || || ||||||||| |||||| ||| | || |||||| Sbjct 95570 CTTC-AGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATA-TCAACTAGGAAGCAC 95513 Query 149517 GAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAA 149576 || | | || | | ||||| || ||| | ||||| ||||||||| || Sbjct 95512 GACGATAGCTGGGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGAAG 95453 Query 149577 TATTT-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGAT 149635 | || || | ||| | ||| | ||||||||| ||||| | | || || ||| Sbjct 95452 AACTTGCTTGA-CATGTAGTTGTAAGTCTCGAGCACACGGTCAACGCGGTCACCCCAGAT 95394 Query 149636 GCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTT 149695 ||| | ||| || ||||| | ||| |||||||| ||||| | | ||| | | || Sbjct 95393 GCCAACGGCCACACGCATGATCATGTGCTGCGGACGCTCGACAATCTTGCCGTCTAGCTT 95334 Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755 |||| ||| ||||| |||||| |||||||||||| ||||| ||||| || | Sbjct 95333 AAGCAGGTACGAACGCTCTAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATC 95274 Query 149756 GTGGTCAATGGCGGCGTC 149773 || ||||||| | ||| Sbjct 95273 GTACACAATGGCAGAGTC 95256 >seq542 Length=123657 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || ||| |||||| |||||||| | Sbjct 107115 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGT--ACGTCCGTCCTCCAGCTGCTTAC 107058 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| ||||||||||| ||||| || || |||||||| ||||| || Sbjct 107057 CAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACT 106998 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || || | | || || |||| |||| ||| ||||| || |||| Sbjct 106997 TCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGAG 106938 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 106937 TCTTGACAAAGATCTGCAT 106919 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| || || || |||||||| | ||| ||||||||| |||||||| Sbjct 106597 GTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 106538 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || || |||||||| ||||||||||| |||||||| ||||| |||| Sbjct 106537 GCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 106478 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | || | || |||| | ||| || |||| ||||| || |||||||| Sbjct 106477 ACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTCTTGCCGGT 106425 >seq94 Length=134607 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | ||||| |||||||| || ||| | || Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTACCAGCGAAGAT 34080 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 || |||||||| || || || ||||| ||||| || |||||| ||||| | || Sbjct 34079 CAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTC 34020 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||| | || ||| || |||| ||| | || || || ||||| || || ||||| Sbjct 34019 GATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAA 33960 Query 133652 AATCTGCAT 133660 ||||||||| Sbjct 33959 AATCTGCAT 33951 >seq548 Length=140442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || || ||||| |||||| Sbjct 35107 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 35166 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | |||||| | || ||| || || | ||| | | Sbjct 35167 TCCTGAATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATG 35226 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || || || ||||| || || |||||| Sbjct 35227 GTCTTACCCGTCAGGGTCTTGACGAAA 35253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417410011640