Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq85 179 5e-39 seq7 141 1e-27 >seq85 Length=153405 Score = 179 bits (198), Expect = 5e-39 Identities = 345/505 (68%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| ||||||| ||| || ||||| |||| ||||||| Sbjct 95241 CACAAGGAAGAGCTGGACTCTGCCATTGTGTACGATCGTGACTTCAACTACCAGTACTTT 95300 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAA---AGTGCGCGATATTGTCGTCGAG 259798 || | |||| | || || |||||| || || || | ||||||| || Sbjct 95301 GGCTTCAAGACCCTAGAGCGTTCGTACCTGCTTAAGCTAGACGGCAAGATTGTCG---AG 95357 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 || || ||| | ||| |||||||||| ||| ||||| | |||| | ||| ||| ||| Sbjct 95358 CGTCCGCAGCACATGATCATGCGTGTGGCCGTTGGCA--TCTGGGGTGACCG-CGTTGAC 95414 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTC 259917 || ||| ||| || ||| | |||||| |||| ||| ||||| Sbjct 95415 CGTGTGCTCGAG------------ACTTACAACTACATGTCA-AGCAAGTTCTTCACACA 95461 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || |||||||||| || || || ||||| |||| | ||| ||||||||||| || Sbjct 95462 CGCCTCGCCCACGCTATTCAACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCT 95521 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | || ||||||| ||| || || || ||||| || ||||| ||| || || | Sbjct 95522 AGTTGATATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTAT 95581 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 ||||||||| ||||||||| |||||| | || ||| | || ||| | ||| | Sbjct 95582 GATCTCCAAGATGGCCGGCGGTATCGGTCTGAACGTCCACCGTATCCGTGCCACTGGCTC 95641 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || |||||||||||| ||| |||||| |||| |||||||| || || || || Sbjct 95642 GTACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCAA 95701 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || ||||||||||||||| Sbjct 95702 CAACACTGCCCGCTACGTCGACCAG 95726 Score = 91.5 bits (100), Expect = 2e-12 Identities = 331/511 (65%), Gaps = 28/511 (5%) Strand=Plus/Plus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| ||||||||||| | ||| |||| | ||||| || ||| |||| || ||| Sbjct 96633 CAGCACGGCGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAG 96692 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 ||||| ||||||| |||| |||||| ||| ||||||||| |||||| ||| Sbjct 96693 ATCCTAGGCAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTG 96752 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGG-TCAAGCG---CATGGTGGCGCG 263087 || | || || || || || |||| ||||| | ||| | |||| | | Sbjct 96753 CTGGCTGGTGAGTTCCAGGTTGTTAACC----CCTGGTTGCTGCGTGACCTGGTCGATCT 96808 Query 263088 CGGCCTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGG 263147 ||||||||| | | | | |||| ||||||||| | || ||||| || Sbjct 96809 TGGCCTGTGGTCCGACACCATGAAGAACCGTATCATTGCGGATAACGGTTCGGTCCA--- 96865 Query 263148 CTTTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT 263207 || | | | || |||| ||||||| || | ||||||||| |||||| | Sbjct 96866 ---AAACATCCCTAATATCCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGAT 96922 Query 263208 GCCCAACCGGGTGACCATTG---ATATGGCGGCCGACCGCGCGCCCTAT-GTCGACCAGA 263263 | | || ||| ||| | ||||| ||||| || | || || | |||||||| Sbjct 96923 TTCTCAGCG---TACCGTTGTGCAGATGGCTGCCGATCGTG-GCGCTTTCATCGACCAGT 96978 Query 263264 GCCAGTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCACGTCGATGCAC- 263322 |||||||| ||| | || | ||||| || | | ||||| |||||| Sbjct 96979 CGCAGTCGCTGAACATTCACATGAAGGACCCTACTATGGGTAAGATCACCAGCATGCACT 97038 Query 263323 --GCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCG 263380 ||| | ||| | ||| |||||||| || |||||||| || || |||| | ||| Sbjct 97039 TTGCC---GGCTGGAAGCTCGGTCTCAAGACCGGTATGTACTACCTACGTACCCAGGCCG 97095 Query 263381 CTGCCAACGCCATTCAATTCACCGTCGATCA 263411 | || ||||||| ||||| ||||| || Sbjct 97096 CCGCTGCTCCCATTCAGTTCACTGTCGACCA 97126 Score = 87.8 bits (96), Expect = 3e-11 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| ||| |||||| | ||||||||||| || | |||| | ||||||||| Sbjct 96030 TGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGAC 96089 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 ||| |||| || ||||||||| | ||||| ||||| | | ||| |||| || || Sbjct 96090 GCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCACTATCCGCAG-CTCCAATCTATG 96148 Query 262216 CACCGAGATCGTCCAGT 262232 ||| || ||| || ||| Sbjct 96149 CACTGAAATCATCGAGT 96165 >seq7 Length=77910 Score = 141 bits (156), Expect = 1e-27 Identities = 349/512 (68%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || ||||||||||| |||||| | || | Sbjct 72526 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCATCTTTTTGGACCGCTGAGGAGATTGATC 72584 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || || | | | ||||||| | ||| Sbjct 72585 TATCCAAGGATCTCCACG----ACTGGAACAACCGTCTAACCAAGGACGAGCAATACTTC 72640 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| |||| || || ||| || ||| ||||| || || |||||| |||| Sbjct 72641 ATCTCCCACATCCTGGCTTTCTTT-GCTGCCTCTGATGGTATTGTCAACGAGAATCTGGT 72699 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | || |||||||| | || ||||| || | || ||||| ||||||| Sbjct 72700 TGAGCGTTTCTCTGGT-GAGGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGA 72758 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||||||||| || |||||||| || ||||||| || ||| |||||| Sbjct 72759 TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTATTGATCGATACTTACATCAAGG 72818 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | || | || |||| || |||||| ||||| | || | | | Sbjct 72819 AGCCTGCTCAG-CGCACATACCTGTTCAACGCCATTGACACCATCCCCTGCATCCGCCGT 72877 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||||| || ||||| | |||||||| | | || | || || ||| | | |||| | Sbjct 72878 AAGGCTGATTGGGCCCTTAAGTGGATTTGCGA-CAGAGAATCCAC-CTTCGGCCAGCGTC 72935 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTT 1456243 |||| | |||||| || |||||||| ||||| ||||| || | | ||| | ||||| Sbjct 72936 TCGTTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGG-TGCCTTTGCTTCTATCTTC 72994 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || || ||||| ||||| Sbjct 72995 TGGCTACGTAAGCGTGGTCTGATGCCTGGTCT 73026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177757090518882