Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq85 120 3e-22 seq542 109 6e-19 seq94 104 2e-17 seq548 86.0 6e-12 >seq85 Length=153405 Score = 120 bits (132), Expect = 3e-22 Identities = 483/755 (64%), Gaps = 7/755 (1%) Strand=Plus/Plus Query 7654 TTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC-GCCTCAATTGTCCTC 7712 || || ||||| |||||||| | || ||| |||||| ||| | | || | || || Sbjct 95454 TTCACACACGCCTCGCCCACGCTATTCAACGCTGGCACAC-CGCAGGCCCAGCTATCGTC 95512 Query 7713 GTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA 7772 ||| || | | ||| || |||||||| || || || ||| | |||||| Sbjct 95513 GTGCTTCCTAGTTGATATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGAC 95572 Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832 ||| || | || ||||| | |||||| || ||||||||||| || | || || Sbjct 95573 TTGTGCTATGATCTCCAAGATGGCCGGCGGTATCGGTCTGAACGTCCACCGTATCCGTGC 95632 Query 7833 CAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCG 7892 || || ||| | ||||||||| | | | ||| | | |||||| |||| Sbjct 95633 CACTGGCTCGTACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCG 95692 Query 7893 CGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGC 7949 || ||||| ||| | | || | || |||||||| || || |||| || ||| Sbjct 95693 TGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTT 95752 Query 7950 TGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAA 8009 |||||| || |||||||||||||||| || | | || | || ||||||| || Sbjct 95753 TGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAA 95812 Query 8010 CATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCT 8069 | || || || | || || ||||| ||| | | | ||||| | |||||||| Sbjct 95813 CCACGGCAAGGAGGAGATTCGTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCT 95872 Query 8070 GTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCC 8129 ||| |||| ||| || | |||| | ||| | ||||||||||| || ||||| Sbjct 95873 GTTCATGAAGCGTGTCGAAAAGAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCC 95932 Query 8130 TTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGA 8189 | | || | ||||| | || || |||| | | ||||| || Sbjct 95933 TGGACTAGCTGATTGCTACGGCGAGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAGTGA 95992 Query 8190 CGGC-GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTC 8248 ||| | | ||| | | | || || | | ||| ||||||| |||| | Sbjct 95993 AGGCCGTGGCCGTCTTACCA-TCAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCC 96051 Query 8249 AAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATC 8308 | | ||| ||||| | || | |||||||||||| ||||| |||||| || ||||| | Sbjct 96052 AGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACC 96111 Query 8309 AAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCG 8368 | | ||| | ||||| || | || |||||| ||| ||||||| | ||||| ||| Sbjct 96112 AGAAAAACCTAGGCACTATCCGCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCG 96171 Query 8369 CGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 | ||||| || || ||||| ||||| ||||| ||| Sbjct 96172 CTCCCGATGAGGTTGCCGTATGCAACCTAGCCTCG 96206 >seq542 Length=123657 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || ||||| || || ||||||||||||||||||||| | |||| || Sbjct 107364 AGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGA 107305 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || || | |||||| || || || || || || || Sbjct 107304 CCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCC 107245 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || ||| | |||||||| || || || || ||||| Sbjct 107244 TTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 107185 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| || || || || ||||| Sbjct 107184 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || ||||| || ||||||||||| | |||| | || || Sbjct 106899 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCA 106840 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || ||||||| |||||||||||| || || ||||| || || || || Sbjct 106839 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGG 106780 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || || || || || || ||||| || ||||| || Sbjct 106779 ATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTT 106720 Query 134685 CCGGTTAAAGTTTTAACGA 134703 ||||| | || ||||||| Sbjct 106719 CCGGTGAGGGTCTTAACGA 106701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || || || || || ||||| || ||||||||||| | || | Sbjct 107136 AGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGT 107077 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || ||||| | ||||||||| || || || || || || Sbjct 107076 CCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCC 107017 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | || || || ||||| || |||||||| Sbjct 107016 TTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTG 106957 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||| || || || || ||||| Sbjct 106956 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 >seq94 Length=134607 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | || || ||||| || || || || | Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||||| || || ||||| || || || || || || ||||| || Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 34021 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| ||||| || ||||| || | || || |||| Sbjct 34020 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 33961 Query 134704 AAATTTGCATTTTGTTT 134720 |||| ||||| ||| || Sbjct 33960 AAATCTGCATCTTGATT 33944 >seq548 Length=140442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | || | || || ||||| ||||| || || | Sbjct 35072 CCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 35131 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || || || ||||| || || || ||||| || ||||| || Sbjct 35132 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT 35191 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || |||||||| ||||| || | || || |||| Sbjct 35192 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 35251 Query 134704 AA 134705 || Sbjct 35252 AA 35253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394855893720