Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq85 120 3e-22
seq542 109 6e-19
seq94 104 2e-17
seq548 86.0 6e-12
>seq85
Length=153405
Score = 120 bits (132), Expect = 3e-22
Identities = 483/755 (64%), Gaps = 7/755 (1%)
Strand=Plus/Plus
Query 7654 TTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC-GCCTCAATTGTCCTC 7712
|| || ||||| |||||||| | || ||| |||||| ||| | | || | || ||
Sbjct 95454 TTCACACACGCCTCGCCCACGCTATTCAACGCTGGCACAC-CGCAGGCCCAGCTATCGTC 95512
Query 7713 GTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA 7772
||| || | | ||| || |||||||| || || || ||| | ||||||
Sbjct 95513 GTGCTTCCTAGTTGATATGAAGGACGACAGCATTGATGGTATCTACGATACGCTGAAGAC 95572
Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832
||| || | || ||||| | |||||| || ||||||||||| || | || ||
Sbjct 95573 TTGTGCTATGATCTCCAAGATGGCCGGCGGTATCGGTCTGAACGTCCACCGTATCCGTGC 95632
Query 7833 CAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCG 7892
|| || ||| | ||||||||| | | | ||| | | |||||| ||||
Sbjct 95633 CACTGGCTCGTACATTGCTGGCACCAACGGCACGTCTAACGGCATTGTTCCCATGCTGCG 95692
Query 7893 CGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGC 7949
|| ||||| ||| | | || | || |||||||| || || |||| || |||
Sbjct 95693 TGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTT 95752
Query 7950 TGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAA 8009
|||||| || |||||||||||||||| || | | || | || ||||||| ||
Sbjct 95753 TGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAA 95812
Query 8010 CATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCT 8069
| || || || | || || ||||| ||| | | | ||||| | ||||||||
Sbjct 95813 CCACGGCAAGGAGGAGATTCGTGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCT 95872
Query 8070 GTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCC 8129
||| |||| ||| || | |||| | ||| | ||||||||||| || |||||
Sbjct 95873 GTTCATGAAGCGTGTCGAAAAGAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCC 95932
Query 8130 TTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGA 8189
| | || | ||||| | || || |||| | | ||||| ||
Sbjct 95933 TGGACTAGCTGATTGCTACGGCGAGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAGTGA 95992
Query 8190 CGGC-GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTC 8248
||| | | ||| | | | || || | | ||| ||||||| |||| |
Sbjct 95993 AGGCCGTGGCCGTCTTACCA-TCAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCC 96051
Query 8249 AAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATC 8308
| | ||| ||||| | || | |||||||||||| ||||| |||||| || ||||| |
Sbjct 96052 AGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACC 96111
Query 8309 AAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCG 8368
| | ||| | ||||| || | || |||||| ||| ||||||| | ||||| |||
Sbjct 96112 AGAAAAACCTAGGCACTATCCGCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCG 96171
Query 8369 CGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403
| ||||| || || ||||| ||||| ||||| |||
Sbjct 96172 CTCCCGATGAGGTTGCCGTATGCAACCTAGCCTCG 96206
>seq542
Length=123657
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || || ||||| || || ||||||||||||||||||||| | |||| ||
Sbjct 107364 AGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGA 107305
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| || || || || || | |||||| || || || || || || ||
Sbjct 107304 CCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCC 107245
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || || || ||| | |||||||| || || || || |||||
Sbjct 107244 TTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 107185
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | ||| || || || || |||||
Sbjct 107184 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| || || || || || ||||| || ||||||||||| | |||| | || ||
Sbjct 106899 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCA 106840
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || ||||| || ||||||| |||||||||||| || || ||||| || || || ||
Sbjct 106839 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCCTGG 106780
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | || || || || || || ||||| || ||||| ||
Sbjct 106779 ATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTT 106720
Query 134685 CCGGTTAAAGTTTTAACGA 134703
||||| | || |||||||
Sbjct 106719 CCGGTGAGGGTCTTAACGA 106701
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || || || || || || ||||| || ||||||||||| | || |
Sbjct 107136 AGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGT 107077
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| || || || ||||| | ||||||||| || || || || || ||
Sbjct 107076 CCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCC 107017
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || ||||| || || || ||| | || || || ||||| || ||||||||
Sbjct 107016 TTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTG 106957
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || | ||| || || || || |||||
Sbjct 106956 ATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
>seq94
Length=134607
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | |||| | || || ||||| || || || || |
Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| ||||||||||| || || ||||| || || || || || || ||||| ||
Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 34021
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | ||||| || || || || ||||| ||||| || ||||| || | || || ||||
Sbjct 34020 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 33961
Query 134704 AAATTTGCATTTTGTTT 134720
|||| ||||| ||| ||
Sbjct 33960 AAATCTGCATCTTGATT 33944
>seq548
Length=140442
Score = 86.0 bits (94), Expect = 6e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || ||||||||||| | || | || || ||||| ||||| || || |
Sbjct 35072 CCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 35131
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
||| ||||||||| || || || ||||| || || || ||||| || ||||| ||
Sbjct 35132 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT 35191
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | ||||| || || || || || || |||||||| ||||| || | || || ||||
Sbjct 35192 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 35251
Query 134704 AA 134705
||
Sbjct 35252 AA 35253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394855893720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |