Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 158 2e-33
seq85 141 1e-28
>seq7
Length=77910
Score = 158 bits (174), Expect = 2e-33
Identities = 549/851 (65%), Gaps = 12/851 (1%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|||||||| |||||||| || ||||| || || || || |||||| ||| || || ||
Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| || || || || || ||| || ||| | || | | |
Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | || ||||| || || ||||| ||||||| || ||||| |||| ||
Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| |||||||| |||| ||||| || |||||| | || || || || || |||
Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATC 73135
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625
| || | || | || || | | || || |||| ||||| || ||
Sbjct 73134 TTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAA 73075
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
|| || | |||||||| | || | |||||||| || || || ||||||||
Sbjct 73074 TCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATC 73015
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
||||||||||| ||||| || || | |||||| | ||||| |||||||| || ||
Sbjct 73014 AGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCG 72955
Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-----ATCCACT 39800
|| || ||||| ||||| || | || ||| || || || | ||| |||||||
Sbjct 72954 ACAGCAGCAAAGGCAACGAGACGCTGGCCG-AAGGTGGAT-TCTCTGTCGCAAATCCACT 72897
Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860
| | ||||||||||| || | || || || || || || || || || || |
Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGT 72837
Query 39861 AATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919
|||| | | || || || | || ||||| || || || || | || ||
Sbjct 72836 -ATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAG 72778
Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979
|||||||| || ||| ||||| || ||||| || || | || || | || || |||
Sbjct 72777 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACC 72718
Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039
|| | | || | || ||| ||| || || || || |||||| || ||||| ||
Sbjct 72717 TCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAAA 72658
Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATC---GGGTGTCAATTTATTCCAGTCATTG 40096
|||| | || || || |||| || || || | || |||||||| | |
Sbjct 72657 GCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTGG 72598
Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156
| ||| || |||| ||| | || ||||| |||||||| || ||||| ||||| ||||||
Sbjct 72597 AGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTAC 72538
Query 40157 ATGTTCCATAT 40167
|| | ||| ||
Sbjct 72537 ATCTGCCAGAT 72527
>seq85
Length=153405
Score = 141 bits (156), Expect = 1e-28
Identities = 454/696 (65%), Gaps = 20/696 (3%)
Strand=Plus/Minus
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTAT 69326
|| |||| || ||||| || || || || ||||||| | | ||| || | || ||
Sbjct 96214 AGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAGC-GCAGTACTCGATGAT 96156
Query 69327 CTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386
|| || |||||||| | |||||| || || |||| ||| || ||||| |||||
Sbjct 96155 TTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTT 96096
Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446
|||||||||||||| || || || || | || || || |||| | |||| ||| |
Sbjct 96095 GCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGC 96036
Query 69447 TTTCCAAACGACCCTAGCATTTATT-----ACGGTCTTGTAACG--CTTCTCTTTTTCAT 69499
| ||| | | || || || |||| | ||| |||| || | | |
Sbjct 96035 GTACCACAGCTTCTGGGCCTTGATGGTAAGACGGCC-----ACGGCCTTCACTCT--CGT 95983
Query 69500 A-TTGTG-TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTC 69557
| || | || | |||| ||||| || || || | |||| | | |||||| || ||
Sbjct 95982 ACTTCTCATACAGAGCC--TCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTC 95925
Query 69558 ATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGG 69617
||| || ||||| | || ||| | | | | || || ||||| || ||||||||
Sbjct 95924 ATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATCGGG 95865
Query 69618 AATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677
|||||| || |||| || ||||| | || | | | || || || || || ||
Sbjct 95864 AATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCG 95805
Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737
||||| || ||||| | | ||| | ||||| || || || || || || | | | ||
Sbjct 95804 CAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACC 95745
Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797
|| || || || || ||||| || | ||| | ||||||||| || |||| | ||||||
Sbjct 95744 GGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCAT 95685
Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT 69857
|||| ||| || ||||| | || || || |||| ||| || || | || || ||
Sbjct 95684 GGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGAT 95625
Query 69858 ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAA 69917
| | ||||| || || || ||||| || ||||| | ||||||| ||||
Sbjct 95624 ACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAG 95565
Query 69918 TGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953
|| || || ||||| || ||||| || || ||||
Sbjct 95564 CGTATCGTAGATACCATCAATGCTGTCGTCCTTCAT 95529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686903983052040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |