Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 158 2e-33 seq85 141 1e-28 >seq7 Length=77910 Score = 158 bits (174), Expect = 2e-33 Identities = 549/851 (65%), Gaps = 12/851 (1%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| |||||||| || ||||| || || || || |||||| ||| || || || Sbjct 73374 TTTTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTC 73315 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || ||| || ||| | || | | | Sbjct 73314 TCCATGAAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGG 73255 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || ||||| || || ||||| ||||||| || ||||| |||| || Sbjct 73254 AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGA 73195 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || |||||||| |||| ||||| || |||||| | || || || || || ||| Sbjct 73194 CCGCAAGGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTGATAATC 73135 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | || | || | || || | | || || |||| ||||| || || Sbjct 73134 TTTTCGACCAGTTCCTTGCTAGGACGGTTGTTCAAGTGCGAGAACAACAAGCAAGCAAAA 73075 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 || || | |||||||| | || | |||||||| || || || |||||||| Sbjct 73074 TCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATC 73015 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||||||||| ||||| || || | |||||| | ||||| |||||||| || || Sbjct 73014 AGACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCG 72955 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-----ATCCACT 39800 || || ||||| ||||| || | || ||| || || || | ||| ||||||| Sbjct 72954 ACAGCAGCAAAGGCAACGAGACGCTGGCCG-AAGGTGGAT-TCTCTGTCGCAAATCCACT 72897 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | | ||||||||||| || | || || || || || || || || || || | Sbjct 72896 TAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGAACAGGT 72837 Query 39861 AATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 |||| | | || || || | || ||||| || || || || | || || Sbjct 72836 -ATGTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAG 72778 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 |||||||| || ||| ||||| || ||||| || || | || || | || || ||| Sbjct 72777 TGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACC 72718 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 || | | || | || ||| ||| || || || || |||||| || ||||| || Sbjct 72717 TCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAAA 72658 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATC---GGGTGTCAATTTATTCCAGTCATTG 40096 |||| | || || || |||| || || || | || |||||||| | | Sbjct 72657 GCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTGG 72598 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | ||| || |||| ||| | || ||||| |||||||| || ||||| ||||| |||||| Sbjct 72597 AGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCCTCGGCCTTCTTGTAC 72538 Query 40157 ATGTTCCATAT 40167 || | ||| || Sbjct 72537 ATCTGCCAGAT 72527 >seq85 Length=153405 Score = 141 bits (156), Expect = 1e-28 Identities = 454/696 (65%), Gaps = 20/696 (3%) Strand=Plus/Minus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTAT 69326 || |||| || ||||| || || || || ||||||| | | ||| || | || || Sbjct 96214 AGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAGC-GCAGTACTCGATGAT 96156 Query 69327 CTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386 || || |||||||| | |||||| || || |||| ||| || ||||| ||||| Sbjct 96155 TTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTT 96096 Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446 |||||||||||||| || || || || | || || || |||| | |||| ||| | Sbjct 96095 GCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGC 96036 Query 69447 TTTCCAAACGACCCTAGCATTTATT-----ACGGTCTTGTAACG--CTTCTCTTTTTCAT 69499 | ||| | | || || || |||| | ||| |||| || | | | Sbjct 96035 GTACCACAGCTTCTGGGCCTTGATGGTAAGACGGCC-----ACGGCCTTCACTCT--CGT 95983 Query 69500 A-TTGTG-TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTC 69557 | || | || | |||| ||||| || || || | |||| | | |||||| || || Sbjct 95982 ACTTCTCATACAGAGCC--TCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTC 95925 Query 69558 ATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGG 69617 ||| || ||||| | || ||| | | | | || || ||||| || |||||||| Sbjct 95924 ATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATCGGG 95865 Query 69618 AATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677 |||||| || |||| || ||||| | || | | | || || || || || || Sbjct 95864 AATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCG 95805 Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737 ||||| || ||||| | | ||| | ||||| || || || || || || | | | || Sbjct 95804 CAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACC 95745 Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797 || || || || || ||||| || | ||| | ||||||||| || |||| | |||||| Sbjct 95744 GGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCAT 95685 Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT 69857 |||| ||| || ||||| | || || || |||| ||| || || | || || || Sbjct 95684 GGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGAT 95625 Query 69858 ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAA 69917 | | ||||| || || || ||||| || ||||| | ||||||| |||| Sbjct 95624 ACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAG 95565 Query 69918 TGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953 || || || ||||| || ||||| || || |||| Sbjct 95564 CGTATCGTAGATACCATCAATGCTGTCGTCCTTCAT 95529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903983052040