Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq85 147 3e-30 seq7 102 1e-16 seq119 91.5 2e-13 >seq85 Length=153405 Score = 147 bits (162), Expect = 3e-30 Identities = 887/1404 (63%), Gaps = 49/1404 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || || | ||| || | ||| | Sbjct 96741 GGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCTAGGATCTGAGAGGTCG 96682 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||| |||||||| || |||| | || ||| || | || | || |||||| ||| Sbjct 96681 AGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTGCGCACGCCGTGCTGCTTGATCTGTT 96622 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 ||||||| ||||||| | | | | || || | || |||| ||||||| ||||| Sbjct 96621 CCTTGAGCGAGGCCCAGTCCCACAGGTCA-CTAGGGGTAACGTTCC-ACATGTCGAACTG 96564 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || || || | || ||||||||| |||| || | ||| | || || ||| Sbjct 96563 CAGGATACCCTGAGATACAGGCGAACCCTCATAGGTGGAGTAAGTACCCTCGGTTTGAGC 96504 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || || ||||| ||||| || ||||| || ||||| | |||| Sbjct 96503 AATCTCGCACGAGGCAGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAG 96444 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 ||| || | || || || ||||||| | | ||| |||| || Sbjct 96443 AGTGCGGGCCTCGGCAGACTCGAAAGGCATGCGTAGGGCTAGGAAAG-----CATCGGCT 96389 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| || ||||| | |||||| || | || ||||| || || | | | || |||| Sbjct 96388 AGACCCTGGACACCAACACCAATGGGGCGATGACGCATGTTG--CTGTTGTG-AGCCTCA 96332 Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 || || || || || || | || || || || || | ||| ||| Sbjct 96331 GGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGGTTACGCACGACCACCTTGGTG 96272 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 || || || || || | |||| | | | | | | |||| | ||| ||| Sbjct 96271 ATCTCGTGCAGCTTCTGGAAATCGTACTCTCCTTTGTTGTAGTCGACAAAGGATGGTAGG 96212 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || || | ||||| || || |||||| | | |||||| | ||||| Sbjct 96211 GCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGAGCGCAGTACTCGATGATTTCA 96152 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || |||| ||||| || || || || | || || ||||| |||||||||||||| Sbjct 96151 GTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCAG 96092 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || |||||||| |||||| | || | || ||||| ||||| | | |||||| || | | Sbjct 96091 GCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTAC 96032 Query 111416 CA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || | |||| | |||| || || || ||||||||| Sbjct 96031 CACAGCTTCTGGGCCTTG----ATGGTAAGACGGCCACGGCCTTCACTCTCGTACTTCTC 95976 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 || || || || |||||||| || || | || || || || | || || Sbjct 95975 ATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCA 95916 Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | || | ||| ||| | ||| || || ||||||||||| || || |||||||||| Sbjct 95915 CATGAGTGTCCAGTTGGCGTTCTT-TTCGACACGCTTCATGAACAGATCGGGAATCCACA 95857 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | | || ||||| | ||| ||| || | || ||||| || | |||| Sbjct 95856 GTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAA 95797 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC------CT 111704 ||||||| | | ||| |||||||| ||||| || || | || | | || || Sbjct 95796 GGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCT 95737 Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | ||| | || | || ||||| || ||| ||| || || || ||||| |||| Sbjct 95736 TGTTA---CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAA 95680 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATC 111822 ||| || | || || || || || || |||||| | |||| | | | Sbjct 95679 CAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAG--CCAGTGGCACGGATACG 95622 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 |||| || || || ||||| || ||| ||| ||||| ||||| | | || || Sbjct 95621 GTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGT 95562 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | |||||||| | || ||| ||||| | | | |||||||| || | ||| Sbjct 95561 ATCGTAGATACCATCAATGCTGTCGTCCTTCATATCAACTAGGAAGCACGACGATAGCTG 95502 Query 111943 CGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-- 111999 || || ||||| ||||| ||||| || || || | ||||| ||| | | |||| Sbjct 95501 -GGCCTGCGGTGTGCCAGCGTTGAATAGCGTGGGCGAGGCGTGTGTGA--AGAACTTGCT 95445 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | || ||| ||||| | ||| |||| | || || |||||| | || Sbjct 95444 TGACATGTAGTTGTAAGTCTCGAGCACACGGTCAACGCGGTCACCCCAGATGCCAACGGC 95385 Query 112060 GACCCGCATGAACATGTACTGTGG 112083 || ||||||| ||||| ||| || Sbjct 95384 CACACGCATGATCATGTGCTGCGG 95361 >seq7 Length=77910 Score = 102 bits (112), Expect = 1e-16 Identities = 347/527 (66%), Gaps = 19/527 (4%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||||||| ||||| ||||| || || |||||| ||||| Sbjct 73080 GCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCA 73021 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| ||||| | ||| | |||| ||| || | || ||||||||||| Sbjct 73020 GGCATCAGACCACGCTTACGTAGCCAGAAGATAGAAGCA-AAGGCACCAGAGAAGAAGAT 72962 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 |||||| ||| ||||| |||| || || | | |||||| | || || || |||| Sbjct 72961 ACCCTCGACAGCAGCAAAGGCAACGAGACGCTGGCCGAAGGTG-GATTCTCTGTCGCAAA 72903 Query 122838 -CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT--- 122893 ||| || | ||||| | ||||| || || || | || | ||||| | Sbjct 72902 TCCACTTAAGGGCCCAATCAGCCTTACGGCGGATGCAGGGGATGGTGTCAATGGCGTTGA 72843 Query 122894 -CAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 122952 || || ||| || ||| ||||| ||||| | || |||||| || || Sbjct 72842 ACAGGTATGTGC-GCTGAGCAG---GCTCCTTGATGTAAGTATCGATCAATAGGGAGTAG 72787 Query 122953 GTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCT 123011 || ||| || | | | ||| ||| | || | ||||||| |||| || ||| Sbjct 72786 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCAGCGAGCCTCGGG 72728 Query 123012 TATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 123071 ||||| |||||| | | ||| | | | |||||| ||||| ||||| || | Sbjct 72727 GATCTGGACCTCACCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGC 72668 Query 123072 AGCAAAGAATGCCAGGATGT---ACTTTATGAATTTCTTTTCATT-TTCATTCAGGGTCT 123127 ||||||||| |||||||||| | | | | ||| || || || | | | || | | Sbjct 72667 AGCAAAGAAAGCCAGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGAC-GGTTGT 72609 Query 123128 TCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 123174 ||||||||| ||||| ||||| | ||||| || || || |||||| Sbjct 72608 TCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCAGCGGTCCAA 72562 >seq119 Length=69832 Score = 91.5 bits (100), Expect = 2e-13 Identities = 328/501 (65%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| |||||||| || | | | || | ||| ||||||||| ||||||| || | Sbjct 35421 CGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATTGGTACCA 35362 Query 11510 GCAATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 || | || || || | | |||| ||| || |||||||||||||| || | || Sbjct 35361 GCCAGCACAACGAT--CTG-CTCAGCGGTGTTGAAACCATCCATCTCGGTTAGGATCTGG 35305 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTT--GCTGGC-ATACCACCAGCACTGCGTTGCTTG 11623 || | || || | ||| || || || | | |||| | || | | ||| || | Sbjct 35304 TTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGTT-CTGG 35247 Query 11624 CCC-ACC----GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 || ||| ||||| || || ||||||||||| || ||||| || | ||| || Sbjct 35246 ACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCGAGCTG 35187 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 | |||| ||||| || || | | || ||| ||||| ||||||||||||||||| | | Sbjct 35186 TCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAACTCAG 35127 Query 11739 CGGCA-GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 || |||| || ||| || || || || || || | || ||| || || Sbjct 35126 AACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCAGCAGT 35068 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTT 11857 ||||| || ||||| || ||| | || | ||| || || || ||||| |||||| Sbjct 35067 GTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCACCAAGA 35008 Query 11858 CCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCC 11917 | | | | |||| || | |||||| || | ||||| ||| | ||| | ||||| Sbjct 35007 CGCACAAACTTCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCACCTTGGCT 34948 Query 11918 GCGTCAATCCCCTCAACATCA 11938 |||| || || | |||||| Sbjct 34947 TCGTCCATACCGGCGACATCA 34927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027595925600