Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq85 179 4e-40 seq7 123 3e-23 seq119 111 2e-19 seq67 93.3 5e-14 >seq85 Length=153405 Score = 179 bits (198), Expect = 4e-40 Identities = 899/1406 (64%), Gaps = 57/1406 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| |||||| | || || || || | |||| ||| Sbjct 95361 CCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGACCGTGTG 95420 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || | ||||| |||| | | ||| ||||| | || || || | Sbjct 95421 CTCGAGACTTACAACTACATGTCAAGCAAGTTCT--TCACACACGCCTCGCCCACGCTAT 95478 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| ||||| ||||| |||| | || |||||||| | | | ||||| | Sbjct 95479 TCAACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGACG 95538 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | || || | | ||||| ||||| ||| ||| | Sbjct 95539 ACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCCG 95598 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGAC 104517 | ||||| || || || |||| | | | |||| | |||||| || || || Sbjct 95599 GCGGTATCGGTCTGAACGTCCACCGTATCCGTGCCACTGG--CTCGTACATTGCTGGCAC 95656 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || ||| |||| ||||| || || || ||| ||| || ||||| Sbjct 95657 CAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCTA 95716 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| | ||| || | | || | || || ||||| || Sbjct 95717 CGTCGACCAGGGTGG---TAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTG 95773 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| | | ||||||||||| |||| ||||| || | |||||| || Sbjct 95774 GCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCG 95833 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| ||| || || |||||||| ||||| ||||||||| | || || | Sbjct 95834 TGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAA 95893 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || | ||| ||| | ||| | || || | || ||||| || | ||| | || Sbjct 95894 GAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGG 95953 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACG 104869 |||||||| || || || || ||||||||| ||||| | || || || || Sbjct 95954 CGAGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCT--TACC 96011 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | ||||| | || |||||| || | || |||||||| || | || Sbjct 96012 AT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCC 96070 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 || |||||| ||||| |||||||| ||| | ||||| || || || || | || || Sbjct 96071 ATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCACTAT 96130 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || |||||||| || || |||||| | || | | |||||| || || Sbjct 96131 CCGCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCGCTCCCGATGAGGTTGCCGT 96190 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA-GACA-TTT 105106 || ||||| || || | || || || | ||| || | | | ||||| || | | Sbjct 96191 ATGCAACCTAGCCTCGCTAGCCCTACCATCCTTTGTCGA-CTACA-ACAAAGGAGAGTAC 96248 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 |||| | || || ||||| | || || ||| ||||| || | |||| Sbjct 96249 GATTTCCAGAAGCTGCACGAGATCACCAAGGTGGTCGTGCGTAACCTGAATCGCATTATC 96308 Query 105167 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||| || ||||| || |||| |||| || || ||| | || || || Sbjct 96309 GATGTCAACCACTACCCTGTGCCTGAG---GCTCACAACAGCAACATGCGTCATCGCCCC 96365 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----T 105278 |||||| | ||||| |||||||| || |||| | ||| | | | | ||||| | Sbjct 96366 ATTGGTGTTGGTGTCCAGGGTCTAGCCGATG----CTTTCCTAG-CCCTACGCATGCCTT 96420 Query 105279 TTGATTCCGACGAAGCGAAGGAAATC--AATGCGCGCATATTTGAGACCATGTATCACGC 105336 | || || | ||| || | | || || || || || |||||||| || ||||| Sbjct 96421 TCGAGTCTGCCGAGGC--CCGCACTCTGAACAAGCAGATCTTCGAGACCATCTACCACGC 96478 Query 105337 CGCTCTTGA--GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 || | ||| | | || | ||| | || | || ||| | || |||| |||| Sbjct 96479 TGC-CCTGACTGCCTCGTGC-GAGATTGCTCAAACCGAGGGTACTTACTCCACCTATGAG 96536 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT 105454 ||||| || | || || || | || || || || |||| |||| || | || || | Sbjct 96537 GGTTCGCCTGTATCTCAGGGTATCCTGCAGTTCGACATGT-GGAACGTTACCCCTAG--T 96593 Query 105455 CAC---TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 || | ||||||| | |||||||||| |||||| || | || | || ||| Sbjct 96594 GACCTGTGGGACTGGGCCTCGCTCAAGGAACAGATCAAGCAGCACGGCGTGCGCAACTCG 96653 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || ||| ||||||| |||||||| ||||| ||| | || ||| | || || || || ||| Sbjct 96654 CTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTAGGCAACAACGAGTGC 96713 Query 105572 TTTGAACCCTACACGACGAACATCTA 105597 || || || ||||| |||||||||| Sbjct 96714 TTCGAGCCTTACACCTCGAACATCTA 96739 >seq7 Length=77910 Score = 123 bits (136), Expect = 3e-23 Identities = 348/523 (67%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAA 94496 |||||| ||||| ||| | ||||| || |||||| | |||| ||||| | ||||| Sbjct 72562 TTGGACCGCTGAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGTCTAAC 72621 Query 94497 TGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAAT 94556 | | || | | ||||| |||||||||| |||||||||| || ||||| || Sbjct 72622 CAAGGACGAGCAATACTTCATCTCCCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTAT 72681 Query 94557 TGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 ||| |||||| | | | || ||| |||||| || |||| | || || | | Sbjct 72682 TGTCAACGAGAATCTGGTTGAGCGTTTCTCTGGTGAGGTCCAGATCCCC-GAGGCTCGCT 72740 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||| | | ||| |||| ||| | | | || ||||| ||| | | Sbjct 72741 GCTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTATTG 72799 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || || | || || ||||| |||| || | | || || | ||||| | || Sbjct 72800 ATCGATACTTACATCAAGGAGCCTGCTCAGCGCACATACCTGTTCAACGCCATTGACACC 72859 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCG 94793 | || || || | || || |||||||| | |||||| |||| ||| || | Sbjct 72860 ATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCCTTAAGTGGATTTGCGACAGAGAATCC 72919 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 |||| | |||| ||| | || ||||| ||| ||||||||||||||||||||| | Sbjct 72920 A-CCTTCGGCCAGCGTCTCGTTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGC 72978 Query 94854 CTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||| ||| |||| | ||||| ||||| ||||| ||||| ||||| |||||| | Sbjct 72979 CTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTA 73037 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||||| ||||| ||||| | ||| ||| ||||| Sbjct 73038 ACGAGCTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGC 73080 >seq119 Length=69832 Score = 111 bits (122), Expect = 2e-19 Identities = 339/514 (66%), Gaps = 20/514 (4%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||| | |||||| || ||||| || | | | ||| | ||| |||||||| ||||||| Sbjct 35428 GATGTGACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATT 35369 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAA 9634 || | || | ||||| || ||| | | | | |||||||||||||| || | Sbjct 35368 GGTACCAGCCAGCACAACGAT--CTGCTCAGCGGTGTTGAAACCATCCATCTCGGTTAGG 35311 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGT 9691 | ||||| | || || || || || || ||| | | |||| | || | | || Sbjct 35310 ATCTGGTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGT 35252 Query 9692 TGCTTTCCCAC----GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747 | || || |||||| || || |||||||||||||||||||| || | ||| Sbjct 35251 TCTGGACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCG 35192 Query 9748 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| |||| ||||| |||||||| || || ||||| ||||||||||||||||| Sbjct 35191 AGCTGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAA 35132 Query 9808 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 | | | ||| | || ||| || || || || || ||| | || ||| | Sbjct 35131 CTCAGAACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCA 35073 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926 | || |||||||| ||||| || ||| | |||| |||||| || |||||||| || | Sbjct 35072 GCAGTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCAC 35013 Query 9927 C---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCAT 9983 | || |||| | ||||||| | ||| || || | ||||| || | ||| Sbjct 35012 CAAGACGCACAAACT---TCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCA 34956 Query 9984 CTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 | ||||| |||| || || | ||||| | ||| Sbjct 34955 CCTTGGCTTCGTCCATACCGGCGACATCAGCAAA 34922 >seq67 Length=164805 Score = 93.3 bits (102), Expect = 5e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGAT 168513 ||||| |||||| ||||| | || || | ||||| || || ||| | ||||| Sbjct 30635 GCATCAGAACCACCGGCAAGACGAGATCCGAAGTTACCACTGGGTTCCAAGCA-ATTGAC 30577 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573 ||||| || |||| | ||| | ||||| ||| ||| || | | ||||| |||| Sbjct 30576 GTTGTTAGATCCCACGAAGTTCTGGGCCAAACTGATAATAGTCTGCTGCAGAGACGCTTC 30517 Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 |||||| ||||| ||| ||| | | |||| | | || |||| | || ||||| || Sbjct 30516 ACCGTGCTGGTAGGCAGTCTGACCAGAGACATAACCAGCTAACTCAACAACCTTCATATC 30457 Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693 | || || ||| | | |||||| || || || ||||||||||| |||||||||||| Sbjct 30456 CTTCTGGATATTGCTCTTGAAGCAAGCATAAATGACCTTGCGTTGACCAGGCTTGAGACC 30397 Query 168694 ATC 168696 || Sbjct 30396 GTC 30394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256709883640