Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq85 179 4e-40
seq7 123 3e-23
seq119 111 2e-19
seq67 93.3 5e-14
>seq85
Length=153405
Score = 179 bits (198), Expect = 4e-40
Identities = 899/1406 (64%), Gaps = 57/1406 (4%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| |||||| | || || || || | |||| |||
Sbjct 95361 CCGCAGCACATGATCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGACCGTGTG 95420
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || | ||||| |||| | | ||| ||||| | || || || |
Sbjct 95421 CTCGAGACTTACAACTACATGTCAAGCAAGTTCT--TCACACACGCCTCGCCCACGCTAT 95478
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| ||||| ||||| |||| | || |||||||| | | | ||||| |
Sbjct 95479 TCAACGCTGGCACACCGCAGGCCCAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGACG 95538
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| || | |||||||| | || || | | ||||| ||||| ||| ||| |
Sbjct 95539 ACAGCATTGATGGTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCCG 95598
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGAC 104517
| ||||| || || || |||| | | | |||| | |||||| || || ||
Sbjct 95599 GCGGTATCGGTCTGAACGTCCACCGTATCCGTGCCACTGG--CTCGTACATTGCTGGCAC 95656
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| || || | || ||| |||| ||||| || || || ||| ||| || |||||
Sbjct 95657 CAACGGCACGTCTAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCTA 95716
Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG------GGATCTATCGCAGTCTATCTTGAGCCATG 104631
|| | || | ||| | ||| || | | || | || || ||||| ||
Sbjct 95717 CGTCGACCAGGGTGG---TAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTG 95773
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691
|||||| ||| | | ||||||||||| |||| ||||| || | |||||| ||
Sbjct 95774 GCACGCCGATGTGTTCGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCG 95833
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
||| ||||| ||| || || |||||||| ||||| ||||||||| | || || |
Sbjct 95834 TGCCCGTGATCTGTTCCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAA 95893
Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
|| | ||| ||| | ||| | || || | || ||||| || | ||| | ||
Sbjct 95894 GAACGCCAACTGGACACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGG 95953
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACG 104869
|||||||| || || || || ||||||||| ||||| | || || || ||
Sbjct 95954 CGAGGAGTTCGAGGCTCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCT--TACC 96011
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| | || | || | ||||| | || |||||| || | || |||||||| || | ||
Sbjct 96012 AT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCC 96070
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
|| |||||| ||||| |||||||| ||| | ||||| || || || || | || ||
Sbjct 96071 ATTCATGCTGTACAAGGACGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGCACTAT 96130
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || |||||||| || || |||||| | || | | |||||| || ||
Sbjct 96131 CCGCAGCTCCAATCTATGCACTGAAATCATCGAGTACTGCGCTCCCGATGAGGTTGCCGT 96190
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA-GACA-TTT 105106
|| ||||| || || | || || || | ||| || | | | ||||| || | |
Sbjct 96191 ATGCAACCTAGCCTCGCTAGCCCTACCATCCTTTGTCGA-CTACA-ACAAAGGAGAGTAC 96248
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|||| | || || ||||| | || || ||| ||||| || | ||||
Sbjct 96249 GATTTCCAGAAGCTGCACGAGATCACCAAGGTGGTCGTGCGTAACCTGAATCGCATTATC 96308
Query 105167 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223
||| || ||||| || |||| |||| || || ||| | || || ||
Sbjct 96309 GATGTCAACCACTACCCTGTGCCTGAG---GCTCACAACAGCAACATGCGTCATCGCCCC 96365
Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----T 105278
|||||| | ||||| |||||||| || |||| | ||| | | | | ||||| |
Sbjct 96366 ATTGGTGTTGGTGTCCAGGGTCTAGCCGATG----CTTTCCTAG-CCCTACGCATGCCTT 96420
Query 105279 TTGATTCCGACGAAGCGAAGGAAATC--AATGCGCGCATATTTGAGACCATGTATCACGC 105336
| || || | ||| || | | || || || || || |||||||| || |||||
Sbjct 96421 TCGAGTCTGCCGAGGC--CCGCACTCTGAACAAGCAGATCTTCGAGACCATCTACCACGC 96478
Query 105337 CGCTCTTGA--GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394
|| | ||| | | || | ||| | || | || ||| | || |||| ||||
Sbjct 96479 TGC-CCTGACTGCCTCGTGC-GAGATTGCTCAAACCGAGGGTACTTACTCCACCTATGAG 96536
Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT 105454
||||| || | || || || | || || || || |||| |||| || | || || |
Sbjct 96537 GGTTCGCCTGTATCTCAGGGTATCCTGCAGTTCGACATGT-GGAACGTTACCCCTAG--T 96593
Query 105455 CAC---TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511
|| | ||||||| | |||||||||| |||||| || | || | || |||
Sbjct 96594 GACCTGTGGGACTGGGCCTCGCTCAAGGAACAGATCAAGCAGCACGGCGTGCGCAACTCG 96653
Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571
|| ||| ||||||| |||||||| ||||| ||| | || ||| | || || || || |||
Sbjct 96654 CTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTAGGCAACAACGAGTGC 96713
Query 105572 TTTGAACCCTACACGACGAACATCTA 105597
|| || || ||||| ||||||||||
Sbjct 96714 TTCGAGCCTTACACCTCGAACATCTA 96739
>seq7
Length=77910
Score = 123 bits (136), Expect = 3e-23
Identities = 348/523 (67%), Gaps = 11/523 (2%)
Strand=Plus/Plus
Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAA 94496
|||||| ||||| ||| | ||||| || |||||| | |||| ||||| | |||||
Sbjct 72562 TTGGACCGCTGAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGTCTAAC 72621
Query 94497 TGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAAT 94556
| | || | | ||||| |||||||||| |||||||||| || ||||| ||
Sbjct 72622 CAAGGACGAGCAATACTTCATCTCCCACATCCTGGCTTTCTTTGCTGCCTCTGATGGTAT 72681
Query 94557 TGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615
||| |||||| | | | || ||| |||||| || |||| | || || | |
Sbjct 72682 TGTCAACGAGAATCTGGTTGAGCGTTTCTCTGGTGAGGTCCAGATCCCC-GAGGCTCGCT 72740
Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674
|||||| | | ||| |||| ||| | | | || ||||| ||| | |
Sbjct 72741 GCTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTATTG 72799
Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734
|| || | || || ||||| |||| || | | || || | ||||| | ||
Sbjct 72800 ATCGATACTTACATCAAGGAGCCTGCTCAGCGCACATACCTGTTCAACGCCATTGACACC 72859
Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCG 94793
| || || || | || || |||||||| | |||||| |||| ||| || |
Sbjct 72860 ATCCCCTGCATCCGCCGTAAGGCTGATTGGGCCCTTAAGTGGATTTGCGACAGAGAATCC 72919
Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853
|||| | |||| ||| | || ||||| ||| ||||||||||||||||||||| |
Sbjct 72920 A-CCTTCGGCCAGCGTCTCGTTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCTCTGGTGC 72978
Query 94854 CTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
||| ||| |||| | ||||| ||||| ||||| ||||| ||||| |||||| |
Sbjct 72979 CTT-TGCTTCTATCTTCTGGCTACGTAAGCGTGGTCTGATGCCTGGTCTGACCTTCTCTA 73037
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||||| ||||| ||||| | ||| ||| |||||
Sbjct 73038 ACGAGCTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGC 73080
>seq119
Length=69832
Score = 111 bits (122), Expect = 2e-19
Identities = 339/514 (66%), Gaps = 20/514 (4%)
Strand=Plus/Minus
Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576
||| | |||||| || ||||| || | | | ||| | ||| |||||||| |||||||
Sbjct 35428 GATGTGACGATCGAAACGACCAGGTCTCATCAACGCCTTATCTAGGATATCCGCGCGATT 35369
Query 9577 CGTCGCGGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAA 9634
|| | || | ||||| || ||| | | | | |||||||||||||| || |
Sbjct 35368 GGTACCAGCCAGCACAACGAT--CTGCTCAGCGGTGTTGAAACCATCCATCTCGGTTAGG 35311
Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGT 9691
| ||||| | || || || || || || ||| | | |||| | || | | ||
Sbjct 35310 ATCTGGTTCAGCGTCGACTCGCGCTCGTCGTTACCGCCGCCCATACGATTAG-AGTCGGT 35252
Query 9692 TGCTTTCCCAC----GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCG 9747
| || || |||||| || || |||||||||||||||||||| || | |||
Sbjct 35251 TCTGGACCGACCAATGGCATCGATTTCGTCAATGAAGACGATGCATGGAGAGTTCTTGCG 35192
Query 9748 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807
||| |||| ||||| |||||||| || || ||||| |||||||||||||||||
Sbjct 35191 AGCTGTCGCAAACAGATCACGTACACGTGAGGGACCAACACCGACAAACATCTCCACAAA 35132
Query 9808 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866
| | | ||| | || ||| || || || || || ||| | || ||| |
Sbjct 35131 CTCAGAACCACTCACACT-GAAGAAAGGCACTCCGGACTCGCCGGCAGTAGCCTTGGCCA 35073
Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 9926
| || |||||||| ||||| || ||| | |||| |||||| || |||||||| || |
Sbjct 35072 GCAGTGTCTTACCGGTACCGGGAGGACCAGACAGGATGGCACCGCGAGGAATCTTAGCAC 35013
Query 9927 C---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCAT 9983
| || |||| | ||||||| | ||| || || | ||||| || | |||
Sbjct 35012 CAAGACGCACAAACT---TCTCAGGCTTCTTGAGGAACTGCACAAACTCCATGATTTCCA 34956
Query 9984 CTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017
| ||||| |||| || || | ||||| | |||
Sbjct 34955 CCTTGGCTTCGTCCATACCGGCGACATCAGCAAA 34922
>seq67
Length=164805
Score = 93.3 bits (102), Expect = 5e-14
Identities = 168/243 (69%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGAT 168513
||||| |||||| ||||| | || || | ||||| || || ||| | |||||
Sbjct 30635 GCATCAGAACCACCGGCAAGACGAGATCCGAAGTTACCACTGGGTTCCAAGCA-ATTGAC 30577
Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTC 168573
||||| || |||| | ||| | ||||| ||| ||| || | | ||||| ||||
Sbjct 30576 GTTGTTAGATCCCACGAAGTTCTGGGCCAAACTGATAATAGTCTGCTGCAGAGACGCTTC 30517
Query 168574 ACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633
|||||| ||||| ||| ||| | | |||| | | || |||| | || ||||| ||
Sbjct 30516 ACCGTGCTGGTAGGCAGTCTGACCAGAGACATAACCAGCTAACTCAACAACCTTCATATC 30457
Query 168634 ATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACC 168693
| || || ||| | | |||||| || || || ||||||||||| ||||||||||||
Sbjct 30456 CTTCTGGATATTGCTCTTGAAGCAAGCATAAATGACCTTGCGTTGACCAGGCTTGAGACC 30397
Query 168694 ATC 168696
||
Sbjct 30396 GTC 30394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583256709883640
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