Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq542 165 2e-35 seq292 116 1e-20 seq94 109 2e-18 seq55 100 9e-16 >seq542 Length=123657 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||| ||||| ||||||||||| || || || || || || Sbjct 106921 CATACCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 106862 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||||||||| || ||||| || || ||||| |||||||| || Sbjct 106861 AGACAGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGG 106802 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || |||||||| || || | || || || || || | |||||| | || Sbjct 106801 AGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTC 106742 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||||||||| || || || || Sbjct 106741 GACTTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAAC 106703 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| ||||| ||||||||||| || || || || || || Sbjct 107149 CATACCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 107090 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || || ||||| || || ||||| ||||| || || Sbjct 107089 AGACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGG 107030 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || ||||| | ||| || | ||| Sbjct 107029 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTC 106970 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 106969 AACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| ||||| || || ||||| Sbjct 106631 CATACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATC 106572 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || ||||| || || || || || ||||||||||| || || Sbjct 106571 AGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGG 106512 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | ||| |||| || Sbjct 106511 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTC 106452 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTG 140718 ||| || || || | ||||| ||||||| || Sbjct 106451 AACCTCGAGGGTGATAGTCTTGCCGGTTACTG 106420 >seq292 Length=75382 Score = 116 bits (128), Expect = 1e-20 Identities = 220/321 (69%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| || ||||| ||||||||| || | | | ||| | ||||| |||| Sbjct 61769 CCATCTTCACCATAGAGGAATTGAACGATATCGCCGAGAGAGTTACGAACAGTTCCATCA 61828 Query 378187 TATCTAACCATTAA-ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTG 378245 || || | || ||| |||||| | ||||| | || || || ||| || ||||||| Sbjct 61829 TA-CTTAGCACTAACATCTTCAAGAGCTTTGACTAGACGACGTTGAATGTATCCAGTTTC 61887 Query 378246 ACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAA 378305 ||| || || ||||||||||||| ||| |||||||| |||| || |||||||| || Sbjct 61888 GGCAGTCTTGACAGCAGTATCAATTAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAA 61947 Query 378306 TTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGA 378365 || | || ||||| |||| || | || | |||| ||| || | | | || || Sbjct 61948 CTCGCTTGGCGTAAGACCACGAAGGTAGGAGTTTTCAACAAAGCCACGAGACTCGGGGGA 62007 Query 378366 ATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTT 378425 | ||||| ||| ||| | ||||| | ||||| | || || ||| | || || || || Sbjct 62008 GTAATCATCTTTGGTAAAGTGAGGCAGGGTACGGTACTTGAAACCAAAAGGGATACGCTT 62067 Query 378426 TCCATCAACATTCTGTTGACC 378446 ||| || || | |||||||| Sbjct 62068 TCCTTCGACGATTTGTTGACC 62088 Score = 104 bits (114), Expect = 7e-17 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 377447 TTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGT 377506 || |||||| || || |||||| | ||||| ||| ||||| | ||||||||||| | Sbjct 61066 TTCCTTCAAA-CGAGGAACACCAAGAGTAACGTTC---TTAGAAGACACACCAGCAAAAT 61121 Query 377507 GGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGC 377566 ||||||| || || || | ||||||| ||||| ||||||||||| || |||| || | Sbjct 61122 GGAAAGTGTTCAGCGTCATCTGAGTAGCAGGCTCGCCAATTGACTGAGCAGCAAGCACAC 61181 Query 377567 CAACCATTTCTCCAGGATTGACAATAGCCT 377596 ||||||| || || ||| | | || ||||| Sbjct 61182 CAACCATCTCACCGGGACTAATAAAAGCCT 61211 >seq94 Length=134607 Score = 109 bits (120), Expect = 2e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||| ||||| Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || |||||||| || ||||| || || |||||||| || |||| || ||||| || Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 33958 ATCTGCAT 33951 >seq55 Length=135122 Score = 100 bits (110), Expect = 9e-16 Identities = 263/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543 || || || ||||||||||| | || ||||| || || || || ||||| || Sbjct 27477 AAGCCCATCATTGAGGTTGAGTTCAAGGGTGAGACCAAGCAGTTCACCCCTGAAGAGATC 27418 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 || || ||||| | | || ||| || | ||||| | || | ||| || || Sbjct 27417 TCCTCTATGGTCCTGATCAAGATGCGAGAGACCGCTGAGTCCTACCTTGGTACCACCGTT 27358 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 | | |||||||| ||||| || ||||| || || || | ||||| || || || Sbjct 27357 AACAACGCTGTTATCACTGTTCCTGCCTACTTCAACGACTCTCAGCGCCAGGCTACCAAG 27298 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 || | || ||||| || | || ||||| | || || || || || ||||| || Sbjct 27297 GACTCCGGTCTTATTGCCGGTCTGAACGTTCTGCGTATCATCAACGAGCCTACTGCCGCT 27238 Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGT-GACCAAGaaaaaaaTATTCTTATTTTTGA 349782 || || || || || ||||| || | ||| || || || | || || || || Sbjct 27237 GCCATCGCCTACGGTCTTGACAAGAA-AGTCGAGGGTGAGCGCAACGTCCTGATCTTCGA 27179 Query 349783 TTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT 349842 | | |||||||||||||| ||||| || || || || |||| || || || || || || Sbjct 27178 TCTGGGTGGTGGTACTTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTCGAGGT 27119 Query 349843 TAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || | ||||| ||||| || || || ||||| ||||| Sbjct 27118 CAAGTCTACTGCCGGTGACACCCACCTGGGTGGCGAAGA 27080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243508635483