Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq542 165 2e-35
seq292 116 1e-20
seq94 109 2e-18
seq55 100 9e-16
>seq542
Length=123657
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | |||||| ||||| ||||||||||| || || || || || ||
Sbjct 106921 CATACCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 106862
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || |||||||||||||| || ||||| || || ||||| |||||||| ||
Sbjct 106861 AGACAGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGG 106802
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || |||||||| || || | || || || || || | |||||| | ||
Sbjct 106801 AGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTC 106742
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || || | ||||||||||| || || || ||
Sbjct 106741 GACTTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAAC 106703
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| ||||| ||||||||||| || || || || || ||
Sbjct 107149 CATACCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 107090
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || || || || ||||| || || ||||| ||||| || ||
Sbjct 107089 AGACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGG 107030
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || | || || || ||||| | ||| || | |||
Sbjct 107029 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTC 106970
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | ||||| || || || || || ||||| ||||||||
Sbjct 106969 AACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Score = 131 bits (144), Expect = 5e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||| ||||| ||||| || || |||||
Sbjct 106631 CATACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATC 106572
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || ||||| || || || || || ||||||||||| || ||
Sbjct 106571 AGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGG 106512
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || ||||| || || | ||| |||| ||
Sbjct 106511 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTC 106452
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTG 140718
||| || || || | ||||| ||||||| ||
Sbjct 106451 AACCTCGAGGGTGATAGTCTTGCCGGTTACTG 106420
>seq292
Length=75382
Score = 116 bits (128), Expect = 1e-20
Identities = 220/321 (69%), Gaps = 2/321 (1%)
Strand=Plus/Plus
Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186
||||| || ||||| ||||||||| || | | | ||| | ||||| ||||
Sbjct 61769 CCATCTTCACCATAGAGGAATTGAACGATATCGCCGAGAGAGTTACGAACAGTTCCATCA 61828
Query 378187 TATCTAACCATTAA-ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTG 378245
|| || | || ||| |||||| | ||||| | || || || ||| || |||||||
Sbjct 61829 TA-CTTAGCACTAACATCTTCAAGAGCTTTGACTAGACGACGTTGAATGTATCCAGTTTC 61887
Query 378246 ACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAA 378305
||| || || ||||||||||||| ||| |||||||| |||| || |||||||| ||
Sbjct 61888 GGCAGTCTTGACAGCAGTATCAATTAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAA 61947
Query 378306 TTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGA 378365
|| | || ||||| |||| || | || | |||| ||| || | | | || ||
Sbjct 61948 CTCGCTTGGCGTAAGACCACGAAGGTAGGAGTTTTCAACAAAGCCACGAGACTCGGGGGA 62007
Query 378366 ATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTT 378425
| ||||| ||| ||| | ||||| | ||||| | || || ||| | || || || ||
Sbjct 62008 GTAATCATCTTTGGTAAAGTGAGGCAGGGTACGGTACTTGAAACCAAAAGGGATACGCTT 62067
Query 378426 TCCATCAACATTCTGTTGACC 378446
||| || || | ||||||||
Sbjct 62068 TCCTTCGACGATTTGTTGACC 62088
Score = 104 bits (114), Expect = 7e-17
Identities = 114/150 (76%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 377447 TTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGT 377506
|| |||||| || || |||||| | ||||| ||| ||||| | ||||||||||| |
Sbjct 61066 TTCCTTCAAA-CGAGGAACACCAAGAGTAACGTTC---TTAGAAGACACACCAGCAAAAT 61121
Query 377507 GGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGC 377566
||||||| || || || | ||||||| ||||| ||||||||||| || |||| || |
Sbjct 61122 GGAAAGTGTTCAGCGTCATCTGAGTAGCAGGCTCGCCAATTGACTGAGCAGCAAGCACAC 61181
Query 377567 CAACCATTTCTCCAGGATTGACAATAGCCT 377596
||||||| || || ||| | | || |||||
Sbjct 61182 CAACCATCTCACCGGGACTAATAAAAGCCT 61211
>seq94
Length=134607
Score = 109 bits (120), Expect = 2e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| || || || || ||||| |||||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || |||||||| || ||||| || || |||||||| || |||| || ||||| ||
Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 33958 ATCTGCAT 33951
>seq55
Length=135122
Score = 100 bits (110), Expect = 9e-16
Identities = 263/399 (66%), Gaps = 2/399 (1%)
Strand=Plus/Minus
Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543
|| || || ||||||||||| | || ||||| || || || || ||||| ||
Sbjct 27477 AAGCCCATCATTGAGGTTGAGTTCAAGGGTGAGACCAAGCAGTTCACCCCTGAAGAGATC 27418
Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603
|| || ||||| | | || ||| || | ||||| | || | ||| || ||
Sbjct 27417 TCCTCTATGGTCCTGATCAAGATGCGAGAGACCGCTGAGTCCTACCTTGGTACCACCGTT 27358
Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663
| | |||||||| ||||| || ||||| || || || | ||||| || || ||
Sbjct 27357 AACAACGCTGTTATCACTGTTCCTGCCTACTTCAACGACTCTCAGCGCCAGGCTACCAAG 27298
Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723
|| | || ||||| || | || ||||| | || || || || || ||||| ||
Sbjct 27297 GACTCCGGTCTTATTGCCGGTCTGAACGTTCTGCGTATCATCAACGAGCCTACTGCCGCT 27238
Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGT-GACCAAGaaaaaaaTATTCTTATTTTTGA 349782
|| || || || || ||||| || | ||| || || || | || || || ||
Sbjct 27237 GCCATCGCCTACGGTCTTGACAAGAA-AGTCGAGGGTGAGCGCAACGTCCTGATCTTCGA 27179
Query 349783 TTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT 349842
| | |||||||||||||| ||||| || || || || |||| || || || || || ||
Sbjct 27178 TCTGGGTGGTGGTACTTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTCGAGGT 27119
Query 349843 TAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
|| | ||||| ||||| || || || ||||| |||||
Sbjct 27118 CAAGTCTACTGCCGGTGACACCCACCTGGGTGGCGAAGA 27080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515243508635483
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