Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq85 260 2e-64 seq67 129 6e-25 seq7 123 3e-23 >seq85 Length=153405 Score = 260 bits (288), Expect = 2e-64 Identities = 516/757 (68%), Gaps = 10/757 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || ||| | || ||| |||||| | | || ||||| | ||||| ||| Sbjct 95374 TCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGAC-CGTGTGCTCGAGACTTAC 95432 Query 53252 GACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 ||| ||| ||| |||| ||| || |||||| |||| || || ||||||||||| | Sbjct 95433 AACTACATGT--CAAGCAAGTTCTTCACACACGCCTCGCCCACGCTATTCAACGCTGGCA 95490 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| | ||| |||||||| || | |||||||| ||| || || | Sbjct 95491 CACCGCAGGCCCAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGACGACAGCATTGATG 95550 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| ||||| ||| ||||| ||||||||| | | || ||||||||| Sbjct 95551 GTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCCGGCGGTATCGGTC 95610 Query 53430 TCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | || || | ||| |||||| | ||| | || || || |||||| | Sbjct 95611 TGAACG--TCCACCGTATCCGTGCCACTGGCTCGTACATTGCTGGCACCAACGGCACGTC 95668 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || || || || ||||| || |||||||||||||| ||||| |||||| ||||||| Sbjct 95669 TAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGG 95728 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 |||| |||||| || | || ||||| ||||| ||||||||||||||||| | | Sbjct 95729 TGGTAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTT 95788 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || ||||| ||| || || | || ||||| || |||||| ||||| Sbjct 95789 CGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGTGATCTGTT 95848 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| ||||||||||| || || |||||| | || || ||| ||| | ||| Sbjct 95849 CCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAAGAACGCCAACTGGAC 95908 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || |||||||| || |||||||| || || | | |||||| |||||||| | | Sbjct 95909 ACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGGCGAGGAGTTCGAGGC 95968 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 ||||| || ||||| | | ||||| | | ||||||| | || | Sbjct 95969 TCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCTTACCATCAAGGCCCAGAAGCT 96028 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || || ||| || |||| ||||| || | || | |||| |||||||| Sbjct 96029 GTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGA 96088 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 | |||| |||||||||||||||| ||| | ||| Sbjct 96089 CGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGC 96125 Score = 131 bits (144), Expect = 2e-25 Identities = 313/461 (68%), Gaps = 23/461 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || ||| |||| || |||||||| || ||||| |||||||| | Sbjct 96639 GGCGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTA 96698 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||| ||||| | |||||||||| |||||| || || Sbjct 96699 GGCAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTGCTGGCT 96758 Query 55598 GGTGAGTT---TGTCATGATCAACAAGCACCT-CGTCAAGGACCTGCAGAAGATC--AAC 55651 |||||||| || | | | | | || ||| |||||| | |||| | Sbjct 96759 GGTGAGTTCCAGGTTGTTAACCCCTGGTTGCTGCGT----GACCTG--GTCGATCTTGGC 96812 Query 55652 AAGTGGAACCCGCA-GATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGA- 55706 |||| || || || |||| || || |||| | ||| || || ||||| | Sbjct 96813 CTGTGG-TCCGACACCATGAAGAACCGTATCATTGCGGATAAC---GGTTCGGTCCAAAA 96868 Query 55707 -ATCTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA 55764 ||| | ||| | || | |||||| | ||| ||| || ||||||||| | || Sbjct 96869 CATCCCTAATATCCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCA 96928 Query 55765 GAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCT 55824 | | | | | ||| ||| |||||||| || | |||||||||||| ||||| || Sbjct 96929 GCGTACCGTTGTGCAGATGGCTGCCGATCGTGGCGCTTTCATCGACCAGTCGCAGTCGCT 96988 Query 55825 GAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTG 55884 |||||| |||| || | ||| | ||| ||| | | | ||||||||| ||| || Sbjct 96989 GAACATTCACATGAAGGACCCTACTATGGGTAAGATCACCAGCATGCACTTTGCCGGCTG 97048 Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||| || |||||||| ||||||||||| || || |||| Sbjct 97049 GAAGCTCGGTCTCAAGACCGGTATGTACTACCTACGTACCC 97089 >seq67 Length=164805 Score = 129 bits (142), Expect = 6e-25 Identities = 195/276 (71%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 |||||||||| ||||||||||| |||||||| ||||| |||||||| | || Sbjct 30666 TAGGCGAGTGTGAATGTAACGAGCCGAGGCAGCATCAGAACCACCGGCAAGACGAGATCC 30607 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | ||||| || |||||| || | |||||| | ||||| ||||| || ||||| Sbjct 30606 GAAGTTACCACTGGGTTCCAAGCAATTGACGTTGTTAGATCCCACGAAGTTCTGGGCCAA 30547 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 ||| ||| || || || ||| ||||| || || || || ||||| | | || Sbjct 30546 ACTGATAATAGTCTGCTGCAGAGACGCTTCACCGTGCTGGTAGGCAGTCTGACCAGAGAC 30487 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGG---TTCTTCTTGAGGCAGGC 117534 || || || | || | | |||||||| || | || || || |||||| ||| || Sbjct 30486 ATAACCAGCTAACTCAACAACCTTCATATC---CTTCTGGATATTGCTCTTGAAGCAAGC 30430 Query 117535 ATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||||| |||||||| |||| ||||| ||||| || Sbjct 30429 ATAAATGACCTTGCGTTGACCAGGCTTGAGACCGTC 30394 Score = 104 bits (114), Expect = 3e-17 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| ||||| || || || | ||| || | ||| ||| || | | || Sbjct 30639 GGCAGCATCAGAACCACCGGCAAGACGAGATCCGAAGTTACCACTGGGTTCCAAGCAATT 30580 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | |||||||| ||||| |||||| | | ||| || ||||||| ||| Sbjct 30579 GACGTTGTTAGATCCCACGAAGTTCTGGGCCAAACTGATAATAGTCTGCTGCAGAGACGC 30520 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||| || || || ||||| | | || || || || |||| | |||||||| Sbjct 30519 TTCACCGTGCTGGTAGGCAGTCTGACCAGAGACATAACCAGCTAACTCAACAACCTTCAT 30460 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| || | || |||||| || || ||||| |||||||| || || || | Sbjct 30459 ATCCTTCTGGATATTGCTCTTGAAGCAAGCATAAATGACCTTGCGTTGACCAGGCTTGAG 30400 Query 152289 ACCGTCCACCACGTGAGGAATCGAACG 152315 |||||| | ||| ||||| || || Sbjct 30399 ACCGTCAAGAACGGAGGGAATAGATCG 30373 >seq7 Length=77910 Score = 123 bits (136), Expect = 3e-23 Identities = 540/840 (64%), Gaps = 22/840 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| ||||| ||||||||||| ||| ||| || ||||||||||| Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCGA 74582 ||||||| ||||| | |||| ||| | | | |||| ||| ||| || Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGGAGACGG 73249 Query 74583 TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCAC 74642 || || || || | |||||||||| |||| | || | |||||| | || ||| Sbjct 73248 TCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGCAA 73189 Query 74643 GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCTTGT- 74700 || || ||||| || | ||||| |||| | | ||| || || | |||||| | Sbjct 73188 GGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTG-ATAATCTTTTC 73130 Query 74701 GA--ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTC 74758 || | || ||| ||| | || | ||| ||| ||| | | | ||||| || Sbjct 73129 GACCAGTTCCTTGCTAGGACGGTTGT---TCAAGTGCGAGAACAACAAGCAAGCAAAATC 73073 Query 74759 CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAG 74818 ||| | || ||||| | | || | || || || || | || |||||||| || Sbjct 73072 TGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAG 73013 Query 74819 TCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 |||||||| | ||| ||||| | | |||| |||| ||||||||| || ||||| Sbjct 73012 ACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGAC 72953 Query 74879 ACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCT 74934 | |||||||| || || || || |||| |||| || ||| ||||| | Sbjct 72952 AGCAGCAAAGGCAACGAGACGCTGGCCGAA-GGTGGATTCTCTGTCGCAAATCCACTTAA 72894 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTT 74993 | ||||| ||||| || || || |||||| | || || || || | ||| ||| | Sbjct 72893 GGGCCCAATCAGCCTTACGGCGGAT-GCAGGGGATGGTGTCAATGGCGTTGAACAGGTAT 72835 Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 | || | || ||||||| | | || |||| || ||||| ||||| || || Sbjct 72834 GTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAGTGG 72775 Query 75054 ATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 || ||| | | |||| | ||||||| | || ||||| | ||||| || || Sbjct 72774 ATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACCTCA 72715 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 || ||| | | | |||||| |||| || || || ||||| || || |||||| Sbjct 72714 CCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAAAGCC 72655 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGG 75230 || | ||| |||| |||| || | || || |||| ||| || | || Sbjct 72654 AGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTGGAGA 72595 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA-CTCCCAATC-GCCTTTTTGTACA 75288 ||| | | |||||||||||| | ||||| ||| | || || ||||| ||||||| Sbjct 72594 TCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCC--TCGGCCTTCTTGTACA 72537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212162647800