Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq85 260 2e-64
seq67 129 6e-25
seq7 123 3e-23
>seq85
Length=153405
Score = 260 bits (288), Expect = 2e-64
Identities = 516/757 (68%), Gaps = 10/757 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251
||||||| || ||| | || ||| |||||| | | || ||||| | ||||| |||
Sbjct 95374 TCATGCGTGTGGCCGTTGGCATCTGGGGTGACCGCGTTGAC-CGTGTGCTCGAGACTTAC 95432
Query 53252 GACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
||| ||| ||| |||| ||| || |||||| |||| || || ||||||||||| |
Sbjct 95433 AACTACATGT--CAAGCAAGTTCTTCACACACGCCTCGCCCACGCTATTCAACGCTGGCA 95490
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | ||| | ||| |||||||| || | |||||||| ||| || || |
Sbjct 95491 CACCGCAGGCCCAGCTATCGTCGTGCTTCCTAGTTGATATGAAGGACGACAGCATTGATG 95550
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| |||||||| ||||| ||| ||||| ||||||||| | | || |||||||||
Sbjct 95551 GTATCTACGATACGCTGAAGACTTGTGCTATGATCTCCAAGATGGCCGGCGGTATCGGTC 95610
Query 53430 TCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
| || || | ||| |||||| | ||| | || || || |||||| |
Sbjct 95611 TGAACG--TCCACCGTATCCGTGCCACTGGCTCGTACATTGCTGGCACCAACGGCACGTC 95668
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| || || || || ||||| || |||||||||||||| ||||| |||||| |||||||
Sbjct 95669 TAACGGCATTGTTCCCATGCTGCGTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGG 95728
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
|||| |||||| || | || ||||| ||||| ||||||||||||||||| | |
Sbjct 95729 TGGTAACAAGCGCCCCGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCCGATGTGTT 95788
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
||||| || || ||||| ||| || || | || ||||| || |||||| |||||
Sbjct 95789 CGAGTTCCTTGATCTGCGCAAGAACCACGGCAAGGAGGAGATTCGTGCCCGTGATCTGTT 95848
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||| ||||||||||| || || |||||| | || || ||| ||| | |||
Sbjct 95849 CCTAGCACTGTGGATTCCCGATCTGTTCATGAAGCGTGTCGAAAAGAACGCCAACTGGAC 95908
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787
|| |||||||| || |||||||| || || | | |||||| |||||||| | |
Sbjct 95909 ACTCATGTGCCCTAATGAGTGCCCTGGACTAGCTGATTGCTACGGCGAGGAGTTCGAGGC 95968
Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847
||||| || ||||| | | ||||| | | ||||||| | || |
Sbjct 95969 TCTGTATGAGAAGTACGAGAGTGAAGGCCGTGGCCGTCTTACCATCAAGGCCCAGAAGCT 96028
Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907
||| | || || ||| || |||| ||||| || | || | |||| ||||||||
Sbjct 96029 GTGGTACGCCATTCTCGAGGCCCAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGA 96088
Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
| |||| |||||||||||||||| ||| | |||
Sbjct 96089 CGCCTGCAACAAGAAGAGCAACCAGAAAAACCTAGGC 96125
Score = 131 bits (144), Expect = 2e-25
Identities = 313/461 (68%), Gaps = 23/461 (5%)
Strand=Plus/Plus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||||| || ||| |||| || |||||||| || ||||| |||||||| |
Sbjct 96639 GGCGTGCGCAACTCGCTACTCCTGGCTCCTATGCCAACTGCCTCGACCTCTCAGATCCTA 96698
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||||||| |||||||| ||||| | |||||||||| |||||| || ||
Sbjct 96699 GGCAACAACGAGTGCTTCGAGCCTTACACCTCGAACATCTACCAGCGCCGTGTGCTGGCT 96758
Query 55598 GGTGAGTT---TGTCATGATCAACAAGCACCT-CGTCAAGGACCTGCAGAAGATC--AAC 55651
|||||||| || | | | | | || ||| |||||| | |||| |
Sbjct 96759 GGTGAGTTCCAGGTTGTTAACCCCTGGTTGCTGCGT----GACCTG--GTCGATCTTGGC 96812
Query 55652 AAGTGGAACCCGCA-GATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGA- 55706
|||| || || || |||| || || |||| | ||| || || ||||| |
Sbjct 96813 CTGTGG-TCCGACACCATGAAGAACCGTATCATTGCGGATAAC---GGTTCGGTCCAAAA 96868
Query 55707 -ATCTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA 55764
||| | ||| | || | |||||| | ||| ||| || ||||||||| | ||
Sbjct 96869 CATCCCTAATATCCCCGCCGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATTTCTCA 96928
Query 55765 GAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCT 55824
| | | | | ||| ||| |||||||| || | |||||||||||| ||||| ||
Sbjct 96929 GCGTACCGTTGTGCAGATGGCTGCCGATCGTGGCGCTTTCATCGACCAGTCGCAGTCGCT 96988
Query 55825 GAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTG 55884
|||||| |||| || | ||| | ||| ||| | | | ||||||||| ||| ||
Sbjct 96989 GAACATTCACATGAAGGACCCTACTATGGGTAAGATCACCAGCATGCACTTTGCCGGCTG 97048
Query 55885 GAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925
|||| || |||||||| ||||||||||| || || ||||
Sbjct 97049 GAAGCTCGGTCTCAAGACCGGTATGTACTACCTACGTACCC 97089
>seq67
Length=164805
Score = 129 bits (142), Expect = 6e-25
Identities = 195/276 (71%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
|||||||||| ||||||||||| |||||||| ||||| |||||||| | ||
Sbjct 30666 TAGGCGAGTGTGAATGTAACGAGCCGAGGCAGCATCAGAACCACCGGCAAGACGAGATCC 30607
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | ||||| || |||||| || | |||||| | ||||| ||||| || |||||
Sbjct 30606 GAAGTTACCACTGGGTTCCAAGCAATTGACGTTGTTAGATCCCACGAAGTTCTGGGCCAA 30547
Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477
||| ||| || || || ||| ||||| || || || || ||||| | | ||
Sbjct 30546 ACTGATAATAGTCTGCTGCAGAGACGCTTCACCGTGCTGGTAGGCAGTCTGACCAGAGAC 30487
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGG---TTCTTCTTGAGGCAGGC 117534
|| || || | || | | |||||||| || | || || || |||||| ||| ||
Sbjct 30486 ATAACCAGCTAACTCAACAACCTTCATATC---CTTCTGGATATTGCTCTTGAAGCAAGC 30430
Query 117535 ATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|||||| |||||||| |||| ||||| ||||| ||
Sbjct 30429 ATAAATGACCTTGCGTTGACCAGGCTTGAGACCGTC 30394
Score = 104 bits (114), Expect = 3e-17
Identities = 183/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108
||| ||||| ||||| || || || | ||| || | ||| ||| || | | ||
Sbjct 30639 GGCAGCATCAGAACCACCGGCAAGACGAGATCCGAAGTTACCACTGGGTTCCAAGCAATT 30580
Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168
|| |||||| | |||||||| ||||| |||||| | | ||| || ||||||| |||
Sbjct 30579 GACGTTGTTAGATCCCACGAAGTTCTGGGCCAAACTGATAATAGTCTGCTGCAGAGACGC 30520
Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228
||||||||| || || || ||||| | | || || || || |||| | ||||||||
Sbjct 30519 TTCACCGTGCTGGTAGGCAGTCTGACCAGAGACATAACCAGCTAACTCAACAACCTTCAT 30460
Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288
||| || | || |||||| || || ||||| |||||||| || || || |
Sbjct 30459 ATCCTTCTGGATATTGCTCTTGAAGCAAGCATAAATGACCTTGCGTTGACCAGGCTTGAG 30400
Query 152289 ACCGTCCACCACGTGAGGAATCGAACG 152315
|||||| | ||| ||||| || ||
Sbjct 30399 ACCGTCAAGAACGGAGGGAATAGATCG 30373
>seq7
Length=77910
Score = 123 bits (136), Expect = 3e-23
Identities = 540/840 (64%), Gaps = 22/840 (3%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||||| || ||||| ||||| ||||||||||| ||| ||| || |||||||||||
Sbjct 73368 TAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCTCCCAGAGAAATGTTCTCCATG 73309
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCGA 74582
||||||| ||||| | |||| ||| | | | |||| ||| ||| ||
Sbjct 73308 AAGTCGAAGGGGTTTGTAGCACGGTACACTTTGTCGTTGCCAAGGGCAACCAGGAGACGG 73249
Query 74583 TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCAC 74642
|| || || || | |||||||||| |||| | || | |||||| | || |||
Sbjct 73248 TCAGCAACGAACTCAATGTACTGCTTCATCAGATCGGCGTTCATGCCTAGCAGACCGCAA 73189
Query 74643 GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCTTGT- 74700
|| || ||||| || | ||||| |||| | | ||| || || | |||||| |
Sbjct 73188 GGAAGAGCCTCAGTTAAGAACTCCTTCTCGATGACAACAGCATCAGTG-ATAATCTTTTC 73130
Query 74701 GA--ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTC 74758
|| | || ||| ||| | || | ||| ||| ||| | | | ||||| ||
Sbjct 73129 GACCAGTTCCTTGCTAGGACGGTTGT---TCAAGTGCGAGAACAACAAGCAAGCAAAATC 73073
Query 74759 CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAG 74818
||| | || ||||| | | || | || || || || | || |||||||| ||
Sbjct 73072 TGTGTGCAAACCCTCATCACGGGAGATAAGCTCGTTAGAGAAGGTCAGACCAGGCATCAG 73013
Query 74819 TCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878
|||||||| | ||| ||||| | | |||| |||| ||||||||| || |||||
Sbjct 73012 ACCACGCTTACGTAGCCAGAAGATAGAAGCAAAGGCACCAGAGAAGAAGATACCCTCGAC 72953
Query 74879 ACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCT 74934
| |||||||| || || || || |||| |||| || ||| ||||| |
Sbjct 72952 AGCAGCAAAGGCAACGAGACGCTGGCCGAA-GGTGGATTCTCTGTCGCAAATCCACTTAA 72894
Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTT 74993
| ||||| ||||| || || || |||||| | || || || || | ||| ||| |
Sbjct 72893 GGGCCCAATCAGCCTTACGGCGGAT-GCAGGGGATGGTGTCAATGGCGTTGAACAGGTAT 72835
Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053
| || | || ||||||| | | || |||| || ||||| ||||| || ||
Sbjct 72834 GTGCGCTGAGCAGGCTCCTTGATGTAAGTATCGATCAATAGGGAGTAGGTCTCGGAGTGG 72775
Query 75054 ATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113
|| ||| | | |||| | ||||||| | || ||||| | ||||| || ||
Sbjct 72774 ATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACCTCA 72715
Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173
|| ||| | | | |||||| |||| || || || ||||| || || ||||||
Sbjct 72714 CCAGAGAAACGCTCAACCAGATTCTCGTTGACAATACCATCAGAGGCAGCAAAGAAAGCC 72655
Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGG 75230
|| | ||| |||| |||| || | || || |||| ||| || | ||
Sbjct 72654 AGGATGTGGGAGATGAAGTATTGCTCGTCCTTGGTTAGACGGTTGTTCCAGTCGTGGAGA 72595
Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA-CTCCCAATC-GCCTTTTTGTACA 75288
||| | | |||||||||||| | ||||| ||| | || || ||||| |||||||
Sbjct 72594 TCCTTGGATAGATCAATCTCCTCAGCGGTCCAAAAAGATGCC--TCGGCCTTCTTGTACA 72537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212162647800
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