Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq85 214 2e-50
seq542 206 3e-48
seq94 140 4e-28
seq548 132 5e-26
>seq85
Length=153405
Score = 214 bits (236), Expect = 2e-50
Identities = 801/1249 (64%), Gaps = 24/1249 (2%)
Strand=Plus/Minus
Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415
||||| || || || || ||| | || | ||| | ||||||||||| || ||||
Sbjct 96766 AACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCG 96707
Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475
||||| || |||||||||| || || || ||||| || | | | || || ||
Sbjct 96706 TTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTG 96647
Query 80476 CGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCTGA---CCAAAAATCAACCCCA 80529
|||| |||||||| |||||| | ||| | || | | | ||| | ||| |
Sbjct 96646 CGCACGCCGTGCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCA----CT 96591
Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587
| | || || |||||||||| ||||| ||| |||| || | || || ||| |
Sbjct 96590 AGGG-GTAACGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCAT 96532
Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGAT 80647
| || ||| | ||||| || | || | ||| ||||| | | ||||| ||||| |
Sbjct 96531 AGGTGGAGTAAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGT 96472
Query 80648 AAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGC 80707
| ||| ||| |||| |||||||| | ||| |||| | ||||| | || ||
Sbjct 96471 AGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGACTCGAAAGGCATGC 96412
Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767
| | ||| | || || || ||||| || || | | || ||||| || |||
Sbjct 96411 GTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCA 96352
Query 80768 TGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGG 80826
|||| | | | | ||||| || | ||||| ||| |||||| | ||| ||||||
Sbjct 96351 TGTTGCTGTTG-TGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGG 96293
Query 80827 TTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTC 80880
|| || || ||| || | || || || ||||| || ||| | || |||
Sbjct 96292 TTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTACTCTCCTTTGTTG 96233
Query 80881 CCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940
| ||||| | || ||| || || || || ||||| ||||| ||||| || | |
Sbjct 96232 TAGTCGACAAAGGATGGTAGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGA 96173
Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000
| |||||| |||||| ||||| | ||| || || || || |||||||||
Sbjct 96172 GCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTC 96113
Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060
||||| ||| |||||| ||||||||||| |||| | ||| | ||||||||| |
Sbjct 96112 TGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTC 96053
Query 81061 TGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCT 81120
|| | || ||| ||||||| ||| | || | ||||||| ||| ||||
Sbjct 96052 TGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATGGTAAGACGGCCACGGCCT 95993
Query 81121 TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCT 81180
|| | | ||||| | || | ||||||| | |||| |||| || |
Sbjct 95992 TCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCA 95933
Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240
|||||||| ||||||||||| || ||||| || || || || ||| |||||||||
Sbjct 95932 GGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAAC 95873
Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300
|| || ||||| || || |||||| || ||| || |||||| | || |||
Sbjct 95872 AGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGG 95813
Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360
|| ||||| || || || || | | || || ||||| |||||||| || | |||
Sbjct 95812 TTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCA 95753
Query 81361 ATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417
| | || ||| | |||||||||| |||||| |||||||| ||| || |||
Sbjct 95752 AAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACA 95693
Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477
|||| ||| || | || || | ||| ||||| || || | || ||| || ||
Sbjct 95692 CGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTG 95633
Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537
|| || | | || |||||||| || || | | ||| || ||| ||||||
Sbjct 95632 GCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAA 95573
Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586
|||| || || || || || || ||||| || | ||||| ||||
Sbjct 95572 GTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATATCAA 95524
>seq542
Length=123657
Score = 206 bits (228), Expect = 3e-48
Identities = 182/227 (80%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || ||||| |||||||| ||
Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||| | || ||||||||||||||||| |||||||| ||||||
Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||||||||| || ||||| | ||||| || | ||||| ||
Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| ||||| || ||||||| || |||||
Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145
Score = 194 bits (214), Expect = 2e-44
Identities = 181/230 (79%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || ||||||||||| |||||
Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||| | || || |||||||||||||| ||||| || |||||
Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||||||||| || ||||| | ||| |||||| | ||||| ||
Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| |||||||| || || || ||||| || ||||||| || ||||| ||
Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGCCA 107376
Score = 172 bits (190), Expect = 6e-38
Identities = 160/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|||||||||||||| || || |||||||||||| |||| ||| | ||| | ||| |
Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| || ||||| |||||||| ||||| ||||| || || |||
Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||| | || ||||| | || || || |||||||||| |||||||| ||
Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCAC 106604
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| ||| | ||||| || |||||
Sbjct 106605 TTGGTCCTCCGTCTGCGTGGTGG 106627
Score = 149 bits (164), Expect = 7e-31
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|| ||||| || ||||| ||||| || || || || || ||||| ||||| || |
Sbjct 106703 GTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACTATCGAC 106762
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || ||||| |||||||| |||||||| || ||||||||||| |||
Sbjct 106763 AACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGATT 106822
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||| |||||||| || |||| || ||||| | ||||| || |||| |||||
Sbjct 106823 TTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAGGAG 106882
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| ||||| || | ||||| || |||||
Sbjct 106883 TCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGG 106917
>seq94
Length=134607
Score = 140 bits (154), Expect = 4e-28
Identities = 145/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| ||||| || |||||||||||
Sbjct 33951 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 34010
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| |||| || ||||| |||||||| ||||| || || |||
Sbjct 34011 GACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 34070
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||||||||| || ||||||| || ||||| | ||||| ||
Sbjct 34071 CAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 34130
Query 27586 GTCCAAAAGG 27595
|||| ||||
Sbjct 34131 ATCCAGAAGG 34140
>seq548
Length=140442
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 27388 GCCAGAAATATTACTATAATG-CAAATCTTT-GTCAAGACGCTTACCGGCAAGACTATTA 27445
|||||||||| || || | | ||| ||| |||||||| || || || ||||| ||||
Sbjct 35281 GCCAGAAATACTAACATCACGACAACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTA 35222
Query 27446 CTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGG 27505
| || ||||| ||||| || | || | || | ||| | || |||||||||||||
Sbjct 35221 CCCTGGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGG 35162
Query 27506 AGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565
|||| ||||| || |||||||||||||| || || ||||| ||||| || ||||||| |
Sbjct 35161 AGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCC 35102
Query 27566 GTACCCTAGCAGACTATAATGTCCAAAAGG 27595
|||| || | ||||| || |||| ||||
Sbjct 35101 GTACTCTGTCTGACTACAACATCCAGAAGG 35072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306400698320
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