Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq85 214 2e-50 seq542 206 3e-48 seq94 140 4e-28 seq548 132 5e-26 >seq85 Length=153405 Score = 214 bits (236), Expect = 2e-50 Identities = 801/1249 (64%), Gaps = 24/1249 (2%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || || || ||| | || | ||| | ||||||||||| || |||| Sbjct 96766 AACTCACCAGCCAGCACACGGCGCTGGTAGATGTTCGAGGTGTAAGGCTCGAAGCACTCG 96707 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || |||||||||| || || || ||||| || | | | || || || Sbjct 96706 TTGTTGCCTAGGATCTGAGAGGTCGAGGCAGTTGGCATAGGAGCCAGGAGTAGCGAGTTG 96647 Query 80476 CGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCTGA---CCAAAAATCAACCCCA 80529 |||| |||||||| |||||| | ||| | || | | | ||| | ||| | Sbjct 96646 CGCACGCCGTGCTGCTTGATCTGTTCCTTGAGCGAGGCCCAGTCCCACAGGTCA----CT 96591 Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 | | || || |||||||||| ||||| ||| |||| || | || || ||| | Sbjct 96590 AGGG-GTAACGTTCCACATGTCGAACTGCAGGATACCCTGAGATACAGGCGAACCCTCAT 96532 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGAT 80647 | || ||| | ||||| || | || | ||| ||||| | | ||||| ||||| | Sbjct 96531 AGGTGGAGTAAGTACCCTCGGTTTGAGCAATCTCGCACGAGGCAGTCAGGGCAGCGTGGT 96472 Query 80648 AAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGC 80707 | ||| ||| |||| |||||||| | ||| |||| | ||||| | || || Sbjct 96471 AGATGGTCTCGAAGATCTGCTTGTTCAGAGTGCGGGCCTCGGCAGACTCGAAAGGCATGC 96412 Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 | | ||| | || || || ||||| || || | | || ||||| || ||| Sbjct 96411 GTAGGGCTAGGAAAGCATCGGCTAGACCCTGGACACCAACACCAATGGGGCGATGACGCA 96352 Query 80768 TGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGG 80826 |||| | | | | ||||| || | ||||| ||| |||||| | ||| |||||| Sbjct 96351 TGTTGCTGTTG-TGAGCCTCAGGCACAGGGTAGTGGTTGACATCGATAATGCGATTCAGG 96293 Query 80827 TTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTC 80880 || || || ||| || | || || || ||||| || ||| | || ||| Sbjct 96292 TTACGCACGACCACCTTGGTGATCTCGTGCAGCTTCTGGAAATCGTACTCTCCTTTGTTG 96233 Query 80881 CCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCA 80940 | ||||| | || ||| || || || || ||||| ||||| ||||| || | | Sbjct 96232 TAGTCGACAAAGGATGGTAGGGCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGGGA 96173 Query 80941 TCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTC 81000 | |||||| |||||| ||||| | ||| || || || || ||||||||| Sbjct 96172 GCGCAGTACTCGATGATTTCAGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTC 96113 Query 81001 TGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACC 81060 ||||| ||| |||||| ||||||||||| |||| | ||| | ||||||||| | Sbjct 96112 TGGTTGCTCTTCTTGTTGCAGGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTC 96053 Query 81061 TGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCT 81120 || | || ||| ||||||| ||| | || | ||||||| ||| |||| Sbjct 96052 TGGGCCTCGAGAATGGCGTACCACAGCTTCTGGGCCTTGATGGTAAGACGGCCACGGCCT 95993 Query 81121 TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCT 81180 || | | ||||| | || | ||||||| | |||| |||| || | Sbjct 95992 TCACTCTCGTACTTCTCATACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCA 95933 Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240 |||||||| ||||||||||| || ||||| || || || || ||| ||||||||| Sbjct 95932 GGGCACTCATTAGGGCACATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAAC 95873 Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300 || || ||||| || || |||||| || ||| || |||||| | || ||| Sbjct 95872 AGATCGGGAATCCACAGTGCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGG 95813 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || ||||| || || || || | | || || ||||| |||||||| || | ||| Sbjct 95812 TTCTTGCGCAGATCAAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCA 95753 Query 81361 ATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | || ||| | |||||||||| |||||| |||||||| ||| || ||| Sbjct 95752 AAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACA 95693 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 |||| ||| || | || || | ||| ||||| || || | || ||| || || Sbjct 95692 CGCAGCATGGGAACAATGCCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTG 95633 Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 || || | | || |||||||| || || | | ||| || ||| |||||| Sbjct 95632 GCACGGATACGGTGGACGTTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAA 95573 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 |||| || || || || || || ||||| || | ||||| |||| Sbjct 95572 GTCTTCAGCGTATCGTAGATACCATCAATGCTGTCGTCCTTCATATCAA 95524 >seq542 Length=123657 Score = 206 bits (228), Expect = 3e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || ||||| |||||||| || Sbjct 106919 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCA 106978 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| | || ||||||||||||||||| |||||||| |||||| Sbjct 106979 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 107038 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||||||||| || ||||| | ||||| || | ||||| || Sbjct 107039 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAAC 107098 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| || ||||||| || ||||| Sbjct 107099 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTGCGTCTGCGTGGTGG 107145 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || ||||||||||| ||||| Sbjct 107147 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 107206 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||| | || || |||||||||||||| ||||| || ||||| Sbjct 107207 GACACCATTGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAA 107266 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || ||||| | ||| |||||| | ||||| || Sbjct 107267 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACCCTATCCGACTACAAC 107326 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||||||| || || || ||||| || ||||||| || ||||| || Sbjct 107327 ATTCAAAAGGAGTCGACCCTACATCTGGTTCTGCGTCTGCGTGGTGGCCA 107376 Score = 172 bits (190), Expect = 6e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||||||||| || || |||||||||||| |||| ||| | ||| | ||| | Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || ||||| |||||||| ||||| ||||| || || ||| Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | || ||||| | || || || |||||||||| |||||||| || Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCAC 106604 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | ||||| || ||||| Sbjct 106605 TTGGTCCTCCGTCTGCGTGGTGG 106627 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| || ||||| ||||| || || || || || ||||| ||||| || | Sbjct 106703 GTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACTATCGAC 106762 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 106763 AACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGATT 106822 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| |||||||| || |||| || ||||| | ||||| || |||| ||||| Sbjct 106823 TTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAGGAG 106882 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| ||||| || | ||||| || ||||| Sbjct 106883 TCTACTCTGCATCTGGTTCTACGTCTGCGTGGTGG 106917 >seq94 Length=134607 Score = 140 bits (154), Expect = 4e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| ||||| || ||||||||||| Sbjct 33951 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 34010 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| |||| || ||||| |||||||| ||||| || || ||| Sbjct 34011 GACACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 34070 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| || ||||||| || ||||| | ||||| || Sbjct 34071 CAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 34130 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 34131 ATCCAGAAGG 34140 >seq548 Length=140442 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27388 GCCAGAAATATTACTATAATG-CAAATCTTT-GTCAAGACGCTTACCGGCAAGACTATTA 27445 |||||||||| || || | | ||| ||| |||||||| || || || ||||| |||| Sbjct 35281 GCCAGAAATACTAACATCACGACAACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTA 35222 Query 27446 CTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGG 27505 | || ||||| ||||| || | || | || | ||| | || ||||||||||||| Sbjct 35221 CCCTGGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGG 35162 Query 27506 AGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565 |||| ||||| || |||||||||||||| || || ||||| ||||| || ||||||| | Sbjct 35161 AGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCC 35102 Query 27566 GTACCCTAGCAGACTATAATGTCCAAAAGG 27595 |||| || | ||||| || |||| |||| Sbjct 35101 GTACTCTGTCTGACTACAACATCCAGAAGG 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306400698320