Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq542 84.2 2e-11 >seq542 Length=123657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| |||||||| | ||||| ||||| || ||| | || |||| |||| | | || || Sbjct 106514 GGACCAGCAACGTCTGATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCTGA 106573 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||| ||| |||| | || ||||| | ||| ||||||| || Sbjct 106574 TTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTCCGTCTGCGTGGTGG 106627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| ||| ||||| || | ||||| || || || || |||| Sbjct 107012 GACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAG 107071 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||| || ||||||||||| || ||| ||| ||||| ||||| || Sbjct 107072 GACGGACGTACTCTGTCTGACTACAACATCCAGAAGGAGTCTACTCTGCATCTGGTTCTG 107131 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 107132 CGTCTGCGTGGTGG 107145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859966902047