Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq542 176 1e-38 seq94 150 4e-31 seq548 125 2e-23 seq68 86.0 1e-11 >seq542 Length=123657 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || |||||||| || || | || || | ||| || Sbjct 107130 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCC 107071 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || || || ||||| ||||||| || ||||||||| Sbjct 107070 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 107011 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| || ||||| || || |||||||||||||||||| ||| Sbjct 107010 TGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTC 106951 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| | |||||| Sbjct 106950 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| ||||| ||||| || || | ||||| | || || Sbjct 107358 AGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCC 107299 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || |||||||| || |||| || ||||||||| Sbjct 107298 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 107239 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| || || ||||| |||||||| ||| Sbjct 107238 TGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 107179 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| ||||| | |||||| Sbjct 107178 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || || || ||||| ||||| || |||||||| || || | ||||| Sbjct 106912 ACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 106853 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| ||||| || || || || || || ||||||| || Sbjct 106852 GCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGAATGCC 106793 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || ||||| ||||| || |||||| || || ||||| Sbjct 106792 CTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAG 106733 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| ||||| ||||| || Sbjct 106732 GGTGATGGTCTTTCCGGTGAGGGTCTTAAC 106703 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||||||||| ||||||||||| ||||| | ||||| | || || Sbjct 106612 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCC 106553 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || || ||||| ||||| ||||| | || ||||||||| Sbjct 106552 TCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 106493 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| || || ||||||||||| ||||| ||| Sbjct 106492 TGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGTC 106433 Query 211083 TTTCCCGT 211090 || || || Sbjct 106432 TTGCCGGT 106425 >seq94 Length=134607 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| ||||||||||| || |||||||| Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || || || || |||| || ||||| ||||||||||| || || || ||| Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| ||| ||||||||||| || |||||||| ||||| || ||||| || || Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 33958 ATCTGCATCTT 33948 >seq548 Length=140442 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || ||||||||||| |||||||| Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| || |||| || ||||||||||| ||||| || ||||| ||| Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 35252 >seq68 Length=154712 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| |||||||||||| | || || ||||| ||||| ||||||| | || || | Sbjct 30111 CTTCCCAAGAAGCACGGACGTGGTGGTCAATCCGCTCTACGTTTTGCTCGTCTACGTGAT 30170 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| | ||||||||| | | || || || ||| |||| | ||| || |||| Sbjct 30171 GAGAAGCGTCACAACTACGTCCGTAAGGTCGCGGAGCACGCTGTCCAGAACTTCATCACC 30230 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || ||||| ||| ||||||| || |||| ||||| || || ||||||| Sbjct 30231 AACGACAAGGTCAACGTTGCTGGTATCATTCTGGCTGGTTCTGCCGACTTCAAGA 30285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143668232765