Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq85 161 1e-34 >seq85 Length=153405 Score = 161 bits (178), Expect = 1e-34 Identities = 452/686 (66%), Gaps = 6/686 (1%) Strand=Plus/Minus Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTC 77737 |||| || ||||| || || || || ||||||| | | ||| || | || || || Sbjct 96211 GCTAGCGAGGCTAGGTTGCATACGGCAACCTCATCGG-GAGCGCAGTACTCGATGATTTC 96153 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 || |||||||| | ||||||||| || |||| ||||||||||| || ||||| Sbjct 96152 AGTGCATAGATTGGAGCTGCGGATAGTGCCTAGGTTTTTCTGGTTGCTCTTCTTGTTGCA 96093 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 | |||||| || || || || || | ||||| || |||| | |||| ||| | | Sbjct 96092 GGCGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGGGCCTCGAGAATGGCGTA 96033 Query 77858 CCAGACGACTCTAG-CTTTTATCATA-GATTTGTATCGCCTCTCTCTTTCATATTGAGTA 77915 ||| | | ||| | | || || || || | |||| || || || || | | Sbjct 96032 CCACA-GCTTCTGGGCCTTGATGGTAAGACGGCCACGGCCT-TCACTCTCGTACTTCTCA 95975 Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || || || || || || || | |||| | | ||||||||| ||||| |||||| Sbjct 95974 TACAGAGCCTCGAACTCCTCGCCGTAGCAATCAGCTAGTCCAGGGCACTCATTAGGGCAC 95915 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 || | || ||||| | | | | || || ||||| || ||||| || ||||| || Sbjct 95914 ATGAGTGTCCAGTTGGCGTTCTTTTCGACACGCTTCATGAACAGATCGGGAATCCACAGT 95855 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || ||||| |||| | | || || || || ||||| ||||| || Sbjct 95854 GCTAGGAACAGATCACGGGCACGAATCTCCTCCTTGCCGTGGTTCTTGCGCAGATCAAGG 95795 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 ||||| | | ||| | ||||| || || || || || || | | || || || || Sbjct 95794 AACTCGAACACATCGGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCGGGGCGCTTG 95735 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 ||||| ||||| || | || | ||| ||||| || | || | || ||| |||| ||| Sbjct 95734 TTACCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAGACACGCAGCATGGGAACAATG 95675 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATG 78275 |||||||| || || || || |||| ||| || ||| | || || ||| | | Sbjct 95674 CCGTTAGACGTGCCGTTGGTGCCAGCAATGTACGAGCCAGTGGCACGGATACGGTGGACG 95615 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 | || || || || |||||||| || || | ||| ||| |||| ||||||||| Sbjct 95614 TTCAGACCGATACCGCCGGCCATCTTGGAGATCATAGCACAAGTCTTCAGCGTATCGTAG 95555 Query 78336 ATACCCTCTATACTGTCATCCATCAT 78361 ||||| || || ||||| ||| |||| Sbjct 95554 ATACCATCAATGCTGTCGTCCTTCAT 95529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || |||||||| |||| || |||| | |||||||| ||||||||||| || || ||| Sbjct 97117 GTGAACTGAATGGGAGCAGCGGCGGCCTGGGTACGTAGGTAGTACATACCGGTCTTGAGA 97058 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| ||| || |||||||| || | || | |||| || || Sbjct 97057 CCGAGCTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTACCCATAGTAGGGTCCTTCATG 96998 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| |||| |||||| || ||||||||||| || | ||| || ||||| | | | Sbjct 96997 TGAATGTTCAGCGACTGCGACTGGTCGATGAAAGCGCCACGATCGGCAGCCATCTGCACA 96938 Query 76962 ATGGTCTTTTGAGGAATTTCCCA 76984 | ||| |||| ||| ||||| Sbjct 96937 ACGGTACGCTGAGAAATCTCCCA 96915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663928635040