Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq542 113 1e-19
seq94 87.8 4e-12
>seq542
Length=123657
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| ||||||||||| || ||||||||||| || | | ||| | || ||
Sbjct 107130 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCGTCC 107071
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || ||||| || || | ||||||||||| | || || ||||| ||
Sbjct 107070 TCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 107011
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || || | || | | | |||||| || || || ||||| || ||
Sbjct 107010 TGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAACCTCGAGAGTGATGGTC 106951
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||| || |||| ||||||
Sbjct 106950 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || ||||| ||||| |||||||| |||| || || | || ||
Sbjct 107358 AGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGATAGGGTGCGACCGTCC 107299
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||| ||||||| | || || ||||| ||
Sbjct 107298 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 107239
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || | || | | |||| ||| ||| || |||||||| || ||
Sbjct 107238 TGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 107179
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||| || |||| ||||||
Sbjct 107178 TTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | || ||||| ||||| ||||||||||||||||| | | || | || ||
Sbjct 106613 GAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCGTC 106554
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || || | |||||||||| | ||| || ||||| ||
Sbjct 106553 CTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTC 106494
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || |||||| | || | | | || || ||| || || || || |||||
Sbjct 106493 CTGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGGGTGATAGT 106434
Query 152072 TTTGCCCGT 152080
||||| ||
Sbjct 106433 CTTGCCGGT 106425
Score = 86.0 bits (94), Expect = 1e-11
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| ||||||||||| || ||||||||||| || | | || | ||||||
Sbjct 106902 AGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 106843
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || ||||| || || | |||||| |||| | || || ||||| ||
Sbjct 106842 TCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTATCC 106783
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | | || || ||| ||||| || || || ||
Sbjct 106782 TGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTC 106723
Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094
|| || ||||| ||||| ||||
Sbjct 106722 TTTCCGGTGAGGGTCTTAACGA 106701
>seq94
Length=134607
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | ||||| || || || || ||||||||
Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | |||||| |||| | || || ||||| || || || || |||||| | ||
Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | |||| || ||| || || || ||||| || || ||||| || ||||| |||||
Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959
Query 152097 ACCTGCATTTT 152107
| |||||| ||
Sbjct 33958 ATCTGCATCTT 33948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153812506552431
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |