Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq542 176 9e-39 seq94 152 1e-31 seq548 147 5e-30 seq67 93.3 9e-14 seq543 84.2 5e-11 >seq542 Length=123657 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||||||||| || || ||||| ||||||||||| | Sbjct 107373 CCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAT 107314 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||| | ||| |||||||| ||| Sbjct 107313 AGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGGA 107254 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | || || ||||| |||| ||||| Sbjct 107253 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCAATGGTGTCGGAAGACTCGACC 107194 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | |||||| || || |||||||| Sbjct 107193 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||||||| | || || || |||||||||||||||| Sbjct 106918 ACCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 106859 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || ||||| || || || || |||| ||| || || || || Sbjct 106858 CAGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGG 106799 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| | || ||| | |||||||| || || | ||||| Sbjct 106798 AATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTATCAGAGGACTCGAC 106739 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 |||||| ||||| ||||| || || | |||||||||| ||| Sbjct 106738 TTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 106697 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||||||| | || || || |||||||||||||||| Sbjct 107146 ACCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 107087 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || || || || | ||| || ||||| || Sbjct 107086 CAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 107027 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || || || || |||| ||| || Sbjct 107026 AATACCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCTGAAGATTCAAC 106967 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | |||||| || || |||||||| Sbjct 106966 CTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | ||| || |||||||||||||| |||| Sbjct 106628 ACCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 106569 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||| || |||| |||||| ||||| || Sbjct 106568 GAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGG 106509 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| || || || | || || Sbjct 106508 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGATGACTCAAC 106449 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 106448 CTCGAGGGTGATAGTCTTGCCGGT 106425 >seq94 Length=134607 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || || || |||||| Sbjct 34138 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATC 34079 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || || || ||||| |||||||| || |||||||| | || || | ||| Sbjct 34078 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGTCG 34019 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||| | || || ||||| || |||||||||||||||| ||||| ||||| Sbjct 34018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 33959 Query 283092 ATCTGCATTTTCAT 283105 |||||||| || || Sbjct 33958 ATCTGCATCTTGAT 33945 >seq548 Length=140442 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| || || ||||||||||| || || || || || |||||| Sbjct 35074 TTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 35133 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||| || ||||| ||||| ||||||||||| || ||||| | || ||| | ||| Sbjct 35134 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCG 35193 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || || || ||||||||||||| ||||| ||||| Sbjct 35194 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 35252 >seq67 Length=164805 Score = 93.3 bits (102), Expect = 9e-14 Identities = 205/295 (69%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAAC-- 274488 ||||| || ||||| || | ||| | ||| | || || | |||| | ||||||| Sbjct 29984 ACGATAGGGGTGATGAACTCCTTGAAGAATTCGGGGATCTTAAGCA-ATGAGGGAAACTG 29926 Query 274489 AACTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATC 274546 |||| |||| ||||| || | ||||| | ||||| || || || || ||| Sbjct 29925 AACT-TGGAGGAAGTTGATCAATAGACCCTTAATATGCGAA--CCATCGTGATCCTGATC 29869 Query 274547 TGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCC-TG 274605 | ||||||||| | ||| ||||||||||| || || |||||| | || || Sbjct 29868 GGCCATGATCATGAGATGGCCATACCGAAGGCTTTTGGTGTCAGTATACACCGTCTTATG 29809 Query 274606 TTTGAAGCCCAAGAATTTGCTTGA-GAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCC 274664 |||| |||||||| | |||||| | | | |||||||| ||||| ||||| | Sbjct 29808 CTTGAGACCCAAGAACT-GCTTGATGTTCTG-GATTTCTTGATTCTTGGTGATTTGGTCA 29751 Query 274665 ACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCC-ATAC 274718 | || ||||||||||| ||||||| |||||| || || ||||||||||| |||| Sbjct 29750 AGTGATGCATCACGTACATTCAGCATCTTACCACGAAGTGGGAAAACGCCGATAC 29696 >seq543 Length=133180 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 316983 GTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAA 317042 ||| ||||| ||||| || | |||| || | | || | | ||||| || || | Sbjct 104913 GTCCAGGTCGTGCTCGACGAAGACAGTCTTGACTTCAGACTGCTTGGGGAAACCCTCGAC 104854 Query 317043 CTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAG 317102 ||| |||| || || | ||| || || |||||||| | ||||||||| |||||||| Sbjct 104853 CTGCTCGTTGTTGATGGCACGCATGAGGGTAGACTTGCCGGAACCATTGGGACCGCAAAG 104794 Query 317103 ACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACC 317162 ||| || || | || ||| ||| | | || | ||| ||||||||||| |||| Sbjct 104793 ACCGTAGCGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTAAGAAGAATCTTGGCACC 104734 Query 317163 ATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 || || |||||||| || | ||||| |||||||| Sbjct 104733 GTAGGCAAGAGAGAAAGTGCAGTTGCACAGATCCTCGCC 104695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046731676234894