Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01-
13] 561 sequences; 33,427,969 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq542 149 2e-30
seq548 127 5e-24
seq94 127 5e-24
>seq542
Length=123657
Score = 149 bits (164), Expect = 2e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || |||||||| || || || ||||| |||||||| ||| |||||
Sbjct 106922 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTTGAATCTTCAGAT 106981
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || |||||||||||||| || || || ||||||||||||||
Sbjct 106982 ACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 107041
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || || ||| | ||||| | || || ||| ||
Sbjct 107042 CGTCTCATTTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTGTCTGACTACAACATC 107101
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || |||||||| ||| ||
Sbjct 107102 CAGAAGGAGTCTACTCTGCATCTGGTTCTG 107131
Score = 134 bits (148), Expect = 3e-26
Identities = 141/184 (77%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||||||||| || || || |||||||| || |||||
Sbjct 106425 ACCGGCAAGACTATCACCCTCGAGGTTGAGTCATCCGATACCATCGACAATGTCAAGTCC 106484
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || |||||||||||||||||||| || || |||||||| ||
Sbjct 106485 AAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAACGTCTGATTTTCGCCGGCAAG 106544
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| || || | || || | ||||| ||| ||||||| || || || || ||
Sbjct 106545 CAACTCGAGGACGGCCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCA- 106603
Query 178125 CTTG 178128
||||
Sbjct 106604 CTTG 106607
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| ||||| || ||||||||||| || || ||| || || ||||
Sbjct 106701 TCGTTAAGACCCTCACCGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACTATCG 106760
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| ||||| || || || || |||||||| ||||| || || |
Sbjct 106761 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGA 106820
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| ||||| || || || || |||||||| | || || | || || ||| |||| || |
Sbjct 106821 TTTTCGCTGGCAAGCAACTTGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAGG 106880
Query 178111 AATCAACACTGCATCTTGTT 178130
| || || |||||||| |||
Sbjct 106881 AGTCTACTCTGCATCTGGTT 106900
>seq548
Length=140442
Score = 127 bits (140), Expect = 5e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 35253 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 35194
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| |||||||||||||| || || || || ||||||||||| || ||
Sbjct 35193 CGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 35134
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | ||||| | || || ||| |||| ||
Sbjct 35133 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGTCTGACTACAACATCCAGAA 35074
>seq94
Length=134607
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || || || ||||| ||||||||||| || ||| |||
Sbjct 33954 CAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCGGAC 34013
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| ||||| || || || || || ||||| |||||
Sbjct 34014 ACCATCGACAATGTCAAGTCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAGCAG 34073
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||||| || ||||| | || || |||| || ||| ||
Sbjct 34074 CGCCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATC 34133
Query 178104 CAAAA 178108
|| ||
Sbjct 34134 CAGAA 34138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203722547805834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |