Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Davidsoniella_20virescens_20[genbank_20GCA_5F001513805.1_202016-01- 13] 561 sequences; 33,427,969 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq542 149 6e-31 seq94 143 2e-29 seq548 125 7e-24 >seq542 Length=123657 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||||| || || |||||| |||||||| |||||||| Sbjct 107374 GCCACCACGCAGACGCAGAACCAGATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCGGA 107315 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || |||||||| || ||||| || || ||||||||||||| ||| Sbjct 107314 TAGGGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGGGG 107255 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| || |||| ||| | | | |||||| ||||| | Sbjct 107254 AATACCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTGTCAATGGTGTCGGAAGACTCGA 107196 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || || |||||||| Sbjct 107195 CCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 107147 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| ||||||||||| || ||||||||| ||||| ||||| || Sbjct 106917 CCACCACGCAGACGTAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 106858 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| ||||| ||||| ||||| || |||| ||| Sbjct 106857 AGGGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGAGGA 106798 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| || ||| ||| | | | ||| || ||||| || Sbjct 106797 ATGCCCTCCTTATCCTGGATCTTGGACTT-GACGTTGTCGATAGTATCAGAGGACTCGAC 106739 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 || | || || || || || || || ||||| |||| Sbjct 106738 TTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGA 106701 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||||| || ||||||||| ||||| ||||| || Sbjct 107145 CCACCACGCAGACGCAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 107086 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 107085 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 107026 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | |||| ||| | | | || || || || | Sbjct 107025 ATACCCTCCTTGTCC-TGAATCTTGGACTTC-ACGTTGTCAATGGTATCTGAAGATTCAA 106968 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || || |||||||| Sbjct 106967 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 106919 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| |||||| || ||||| || || ||| Sbjct 106627 CCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGAG 106568 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| |||||||||||||| ||||| || || ||||||| || Sbjct 106567 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATCAGACGTTGCTGGTCCGGAGGG 106508 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 106507 ATGCCCTCCTTGTCC 106493 >seq94 Length=134607 Score = 143 bits (158), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| |||||||| | || || |||||||| || ||||| | Sbjct 34140 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGA 34081 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| || |||| ||||| || |||||| ||| ||| || ||| || | Sbjct 34080 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTAGACTTGACATTGT 34021 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || ||||| ||||||||||| ||||| || Sbjct 34020 CG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGAC 33963 Query 41851 GAAAATCTGCATGTT 41865 |||||||||||| || Sbjct 33962 GAAAATCTGCATCTT 33948 >seq548 Length=140442 Score = 125 bits (138), Expect = 7e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || || || | || || ||||||||||| ||||| | Sbjct 35072 CCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 35131 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||||| ||||| || |||||||||| ||| | || | | ||| | Sbjct 35132 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTG 35190 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||||| || || || ||||||||||| ||||| ||| Sbjct 35191 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 35250 Query 41852 AAA 41854 ||| Sbjct 35251 AAA 35253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300758093200