Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1786 145 2e-29 seq1769 84.2 5e-11 >seq1786 Length=271448 Score = 145 bits (160), Expect = 2e-29 Identities = 280/407 (69%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| || | ||||||||||| | || ||||| | | Sbjct 165382 CCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAACTGA 165441 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 || ||| || |||||||| || || | | |||| | || ||| || | ||| || Sbjct 165442 TCTCTCGTGATGAGGGTCTGCA-CACCGACTTCGCCTGTCTGCTGTTCTCCCACCTCAAG 165500 Query 230356 AACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 ||| | |||| | || | ||| | | ||||| || || || || | | ||| Sbjct 165501 AAC---CGACCAAGCAAGCAGCGCGTCCAGGACATCATCACCGAGGCTGTCGCCATCGAG 165557 Query 230413 AAGGAGTTCATTTGT--GACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTA 230470 ||||| || |||| || ||| | |||||| ||| | ||||||||| || | || | Sbjct 165558 AAGGAATT--TTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACTCTAACCTCA 165615 Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530 || |||||||||||||| || ||||||||| | | || || || || |||| || | Sbjct 165616 TGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAACGACAAGG 165675 Query 230531 TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCA 230590 | ||||| || |||||||| | || |||||| ||| || || || ||||||| Sbjct 165676 TTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCA 165735 Query 230591 ACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||| ||||||||| ||||||| |||| | |||| || ||| Sbjct 165736 ACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGCGTCATG 165782 >seq1769 Length=80265 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 319811 CGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACA-TCCGCAGAGGGGAACCCTTCA 319869 |||| || ||||| |||||| | |||| || | | || || ||| |||||| | Sbjct 73435 CGTCAAGGTCGTGCTCCACGAACACAGTCTTGACCTCGCTCTGCTTGGGGAAACCCT-CG 73493 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 | || |||| || || ||||| ||||| || || || || ||||| || || ||| Sbjct 73494 ACTTGCTCGTTGTTGATGGCACGCATGAGGGTAGACTTTCCAGCACCGTTGGGACCGCAC 73553 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| || || || || ||| || || |||||||| || ||||| || || Sbjct 73554 AGACCGTAACGACGGCCACGCTTGAGGCGGATGCGAGTGTTGTTGAGCAGAATCTTGGCA 73613 Query 319990 CCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || || || |||||||| || Sbjct 73614 CCGTAGGCGAGGGAGAACTCGCACTCACACAGGTC 73648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057791702319290