Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1786 125 8e-24 seq1963 123 3e-23 >seq1786 Length=271448 Score = 125 bits (138), Expect = 8e-24 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || ||| ||||| ||| ||| |||||||| || | | || | ||||||||| Sbjct 165487 AACAGCAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAG 165428 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| || |||||||| || ||||| || ||||| || |||| || Sbjct 165427 AAGGTCAGGCCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCG 165368 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 ||||| || || || || || |||||||||| |||| | |||| || || Sbjct 165367 CTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 165308 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 | ||| || |||||||| ||||||| ||||||||||| Sbjct 165307 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 123 bits (136), Expect = 3e-23 Identities = 405/623 (65%), Gaps = 16/623 (3%) Strand=Plus/Plus Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 |||||| || |||| || ||||| | | |||||| |||| | || || || ||||| Sbjct 430042 TCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCAT 430101 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 || ||||| || ||||| || || | || ||||| | || || ||||| || || Sbjct 430102 GAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCC 430161 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||| || || || ||| | | | || | ||||| || || | ||| || Sbjct 430162 GTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGAT 430221 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | | || || || ||||| || ||||| || | |||| || || || ||| | Sbjct 430222 AGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAA 430281 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | |||||| || | || |||||||| | || || || || | ||| || || Sbjct 430282 GACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCC 430341 Query 54280 ACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 ||||||| ||| | |||| | || || || || ||||| || ||||| | Sbjct 430342 GGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGGAGATCATG 430399 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || || | ||| || ||||||||||| || || || ||| |||| | | || Sbjct 430400 GCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGG 430459 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || |||| ||| | | ||| || ||||| ||||| || || || ||||| Sbjct 430460 AAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGG 430519 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT-----GA-GTCTATATCC 54511 || || | || | || | || |||||||||||||| || || ||| || ||| Sbjct 430520 GTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTC-ATCTCC 430578 Query 54512 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | |||| || || ||||||||||| | |||||| || || | || |||| || Sbjct 430579 C-CAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTCGACGACTTTA 430633 Query 54572 TTGTTTATTTTCAGCAAGTAGGA 54594 || | ||||||| ||| || Sbjct 430634 CCGTCGAGCTTCAGCAGGTATGA 430656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703914517840