Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1786 232 7e-56 seq1562 165 8e-36 seq1808 123 3e-23 seq1287 123 3e-23 >seq1786 Length=271448 Score = 232 bits (256), Expect = 7e-56 Identities = 325/451 (72%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||| |||||| | | | ||| || ||| | | |||| | Sbjct 165271 AGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCCACCTATGCCCAGCGAC 165330 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || ||||||||||| ||||||| ||| ||||| |||| || | Sbjct 165331 TGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTCGCTTCCATCTTCT 165390 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || |||||||| |||||||| ||| |||||| || ||||| | | Sbjct 165391 GGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAACTGATCTCTCGTG 165450 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||||||||| |||||| |||||| |||||||| || | | | ||||| | Sbjct 165451 ATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCCCACCTCAAGAACCGACCAA 165510 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | ||||||| ||| ||| ||||||| || |||||||||||| || || | | Sbjct 165511 GCAAGCAGCGCGTCCAGGACATCATCACCGAGGCTGTCGCCATCGAGAAGGAATTTTTGA 165570 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 |||| || ||||| |||| || || || | || | | || | ||| ||| ||||| Sbjct 165571 CCGAGGCTCTGCCATGTGC-CCTCCTCGGCATGAACT-CTAACCTCATGAAGCAGTACAT 165628 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||| || ||||||||| | || ||| ||| |||| | || |||| ||||| || | Sbjct 165629 CGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAACGACAAGGTTTACAAGTCGTC 165688 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCC 117430 |||||| | ||||| ||| | ||||||| Sbjct 165689 CAACCCCTTCGACTTCATGGAGAACATCTCC 165719 Score = 152 bits (168), Expect = 5e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | ||||||| | || || Sbjct 164866 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCCGAGGAGATTGATCTC 164925 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||||| | ||||||| | || ||| |||| |||| || |||| | Sbjct 164926 TCCAAGGACATGCACGACTGGAGCAACCGTCTGACCGACGACGAACGGTATTTTGTGTCC 164985 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||| || || || |||||||||||||| || || ||||| Sbjct 164986 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTCGTGGAGCGG 165045 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 165046 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 165105 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || |||||| || || ||| Sbjct 165106 GAGAACATCCACTCAGAGACATACTCTCTCCTCATTGATACCTAC 165150 >seq1562 Length=24550 Score = 165 bits (182), Expect = 8e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| ||||||||| | || || || | || Sbjct 19606 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 19547 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || ||||||||| | |||||| Sbjct 19546 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 19487 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 19486 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 19427 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| |||| || || || ||| ||||| || | || || ||| Sbjct 19426 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGAGGTGGTGGC 19376 >seq1808 Length=99283 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || ||||| ||||| |||||||| |||| || || || || Sbjct 20005 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCC 19946 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 19945 GATACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 19887 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| || || || || | || |||||| ||||||||| Sbjct 19886 ACAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTACAA 19827 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| |||| || || || || Sbjct 19826 CATTCAGAAGGAATCCACCCTTCACCTCGT 19797 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || || || |||| || || | | Sbjct 19549 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATCG 19490 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| ||||||||||| | ||||| Sbjct 19489 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 19431 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||||||| | ||| ||||| |||||||| |||| || || | |||||||| Sbjct 19430 GCAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAA 19371 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||||||||| Sbjct 19370 CATTCAGAAGGAGTCCACGCTGCA 19347 >seq1287 Length=86926 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| || |||||| | || || || || |||||| | | Sbjct 66671 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCCGACACCATC 66612 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| || ||| | |||||||| ||| | Sbjct 66611 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATT 66553 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||| Sbjct 66552 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 66493 Query 40878 GG 40879 || Sbjct 66492 GG 66491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203852908080