Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1562 120 2e-22 seq1808 116 3e-21 >seq1562 Length=24550 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | |||| ||| || ||| ||||||||| |||||||||||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || || || || |||||||| |||| ||||| ||||| || || Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | |||| | ||||||| Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19559 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | ||| || ||||||||||| || |||||||| ||||| |||||| || Sbjct 19560 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19610 >seq1808 Length=99283 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||||||||||||||| || || |||| ||| Sbjct 19341 ACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTCCGGCCGTCTTCC 19400 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || || ||||| || || | |||||||||||| | Sbjct 19401 AGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 19460 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | ||||| ||| ||||| | ||||| ||||| Sbjct 19461 ATCTTCGACTTGA-CGTTGTCAATCGTGTCCGATGACTCAACCTCGAGCGTAATAGTCTT 19519 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| ||||||||||| || |||||| Sbjct 19520 CCCCGTCAAGGTCTTCACAAAAATCTGCATG 19550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395063725905043