Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1963 264 1e-65 seq1786 159 3e-34 seq1808 100 3e-16 seq1562 98.7 9e-16 >seq1963 Length=539952 Score = 264 bits (292), Expect = 1e-65 Identities = 582/866 (67%), Gaps = 10/866 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| || ||||| || ||||| || || ||||| || || |||||| | || || Sbjct 429766 GGCAATAGAGGCCAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTC 429825 Query 23080 GGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 || || || || ||| | || || |||| || |||||||||| ||||| || Sbjct 429826 AGTGCAGAGGTTTGAGCTGCGG---ATGGTACCCAGGTTTTTCTGGTTGCTCTTTCGGTT 429882 Query 23137 GCACGAA-TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCG 23195 | || || ||||| |||||| | || |||| |||||| ||| | ||||| ||| | Sbjct 429883 -CGCGTGGTCTTTGTATAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGG 429941 Query 23196 CTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTT 23254 | ||||| |||| || | | ||| || | | ||| || | ||||||||| Sbjct 429942 CGTACCACAACTTCTGGGCCTTCATG-GTCTTGCGACCGCGGCCCTCCTTCTCGTACTTC 430000 Query 23255 TGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 | ||| | || ||||| || ||||||| |||||||| || || || | | | || Sbjct 430001 TCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGTCGGCAAGTCCAGGGCACTCATTGGGG 430060 Query 23315 CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374 |||||||| ||||| || || || || || |||| || ||||| || ||||| Sbjct 430061 CACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCATGAACAGATCGGGGATCCAG 430120 Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434 || || ||| || || ||||| || | |||||| |||||| |||||| || || Sbjct 430121 AGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCA 430180 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 | ||| || || ||||| || ||||| ||||| ||||| | || || || || || | | Sbjct 430181 AGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGC 430240 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || ||||||||||| ||||| || ||||| || ||||| | || | | ||| || | Sbjct 430241 TTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAAGACCCGCAACATGGGGGTG 430300 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGA 23614 | || ||||| | |||| || || | || || | || || | ||| Sbjct 430301 ATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCCGGTGGCACGGATACGGTGG 430360 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 |||| || || || ||||| || || || ||||| || || || || |||||| Sbjct 430361 ACGTTGAGGCCGATACCTCCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGCGTGTCG 430420 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 ||||||||||| ||||||||||| || | |||| | ||| ||||| |||| || | Sbjct 430421 TAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGGAAGCACGATGACAGCTGGGGC 430480 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATT 23794 | ||| || | || ||| | ||| || |||||| || ||| | || ||||| Sbjct 430481 TGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATC 430540 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 || |||||||| |||||| | || | ||| ||||| || |||| ||||| ||| Sbjct 430541 AGGTTGTACGTCTCGATGACTCTCTCGACGTCATCTCCCCAGATGCCGACAGCGACACGC 430600 Query 23855 ATCATCATGTATTGAGGTCTCTCGAC 23880 || ||||||| ||| || | |||||| Sbjct 430601 ATGATCATGTGTTGTGGCCGCTCGAC 430626 Score = 156 bits (172), Expect = 4e-33 Identities = 483/738 (65%), Gaps = 17/738 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||| ||||| || || | |||||| || ||||| || Sbjct 428891 GTGCGGAGGTAGTACATGCCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 428950 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| ||||| | |||| ||||| ||| ||||| Sbjct 428951 GTGATCTTGCCCATGGACGGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATG 429010 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACGGT 22323 || || || || || || ||||| | | |||| || | | || |||||||| ||||| Sbjct 429011 AATGCACCACGGTCAGCAGCCATCTGCA-CAATAGTCCTCTGAGAGATTTCCCAAACGGT 429069 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTAT 22382 ||||||||| | |||| || ||| || | | || | |||| | ||| || | | Sbjct 429070 CTTGTACAGGGCCTTGATGTCAGCCGGGAT-GCTGGGAATGTTCTGTATGGAACCATCCT 429128 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 | ||||| || || || | || |||||| |||| | ||||| || ||| Sbjct 429129 CGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGA 429188 Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGG 22502 || | |||| || || || |||||||| | | || || || ||||| ||||||| Sbjct 429189 GAAGCCAAGGGTTGACAACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGG 429248 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | || ||||| ||||| ||||| | ||| || || || |||| Sbjct 429249 AGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCA 429308 Query 22563 TCGGCGCCAACAGTAGCGAG---TTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAG 22617 | ||||||| ||| | || || | | ||| || |||| || | || | | Sbjct 429309 TTGGCGCCA---GTAACAAGCTGTTGCGGACACCGGTCTCCTTGATCTTGTCCTTGAGGG 429365 Query 22618 CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACAC 22677 | || ||||||||| || |||| ||| | ||||| |||||| ||| | || | | Sbjct 429366 CTTC--CCAGTCCCAGAGCGCGGATGGCTTGACATT---CCACATGTCGAACTGAAGGAT 429420 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737 ||| | |||| ||||| |||||||| | |||||| || | | | ||||| || Sbjct 429421 GCCCTGTGAGACCGGACTGCCCTCGTACGTCTTGTACGGGCCCTCCACCTTGGCAATATC 429480 Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGC 22797 || || | || ||| || |||||||||||||| | |||||||| || Sbjct 429481 GCTTGATGCGGTAAGAGCAGCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAGCTCACG 429540 Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857 ||| || | ||| | |||||||| | || |||||| || || | |||||| || Sbjct 429541 GGCCTCGGGGGAGTCGAAAGGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGAC 429600 Query 22858 GCCTATACCGATCGGTCG 22875 || | ||| |||||||| Sbjct 429601 ACCAACACCAATCGGTCG 429618 >seq1786 Length=271448 Score = 159 bits (176), Expect = 3e-34 Identities = 333/489 (68%), Gaps = 18/489 (4%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGA 57972 ||||||||| || ||| | | || ||||| | | ||| | | |||| | ||| || Sbjct 165269 CAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGA-GTCCACCTATGCCCAGC 165327 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || || ||||||||||| ||||| ||||| ||| || || | || | Sbjct 165328 GACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTCGCTTCCATCT 165387 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | ||||| || || || ||||| |||||||| || |||||| |||| || | Sbjct 165388 TCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAACTGATCTCTC 165447 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | || |||||||| || || || || || || || ||| ||| ||| |||| ||| Sbjct 165448 GTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCCCAC---CTCAA-GAAC 165503 Query 58153 CGAC---GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 |||| || | | ||| || |||||| ||||||||||| ||||| ||||| || || Sbjct 165504 CGACCAAGCAAGCAGCGCGTCCAGGACATCATCACCGAGGCTGTCGCCATCGAGAAGGAA 165563 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 ||| | ||||| || || || ||| | ||||| |||||| | | | ||| || Sbjct 165564 TTTTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACTCTAACCTCATGAAGCAG 165623 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTA 58324 ||||| || ||||| |||||| | || || ||| | ||| | || || ||| Sbjct 165624 TACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCC----TGGGCAACGACAAGGTTTA 165679 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 ||| || || || || || || ||| | ||||| |||| |||||||| ||||| Sbjct 165680 CAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTT 165739 Query 58385 TTTCGAAAA 58393 ||||| || Sbjct 165740 CTTCGAGAA 165748 >seq1808 Length=99283 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||| || || || || || |||| ||||| | || Sbjct 19550 CATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATC 19491 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || ||||||||| ||| | || || ||||| Sbjct 19490 GGACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 19431 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || ||||||||||| ||| |||||||| |||| || || || || Sbjct 19430 GCAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAA 19371 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || || |||| || Sbjct 19370 CATTCAGAAGGAGTCCACGCTGCACTTGGTGCT 19338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || ||| |||| ||||| | || Sbjct 19777 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAGGTTGAGTCTTCT 19718 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || ||| ||||| ||| | || || |||||| Sbjct 19717 GATACTATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 19658 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| | || ||| ||| | || || ||| Sbjct 19657 CAGCGCTTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGGACCCTCTCGGACTACAAC 19598 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || ||||| ||||| || Sbjct 19597 ATTCAGAAGGAATCTACACTTCACCTGGTTCT 19566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||||||||| || || ||||| || ||||| |||| ||||| | || Sbjct 20006 CATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTC 19947 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | ||||| | || ||||||||| || | || || ||||| Sbjct 19946 CGATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 19887 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || |||||||| || | || || || | ||| || || Sbjct 19886 ACAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTACAA 19827 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || ||||| || ||||| || || || | ||| | || |||| Sbjct 19826 CATTCAGAAGGAATCCACCCTTCACCTCGTTCTCCGTCTGCGTGGTGGTA 19777 >seq1562 Length=24550 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 19607 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 19548 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 19547 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 19488 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| ||| | || ||| || | ||| || || Sbjct 19487 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 19428 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || ||||| || | ||| | || ||| Sbjct 19427 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGAGGTGGT 19379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753121733360