Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1786 149 8e-31 seq1963 113 6e-20 >seq1786 Length=271448 Score = 149 bits (164), Expect = 8e-31 Identities = 164/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| ||| |||||||||||| || | | || | |||||| || Sbjct 165487 AACAGCAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAG 165428 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| || ||||| || ||||||||||||| ||| Sbjct 165427 AAGGTCAGGCCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCG 165368 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749 |||||||| || || || || |||||||||| |||| || |||| || || Sbjct 165367 CTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 165308 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| || |||||||| ||||||| ||||||||||| Sbjct 165307 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 113 bits (124), Expect = 6e-20 Identities = 379/584 (65%), Gaps = 16/584 (3%) Strand=Plus/Plus Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 || ||| || |||| || ||||| | | |||||| |||| | || || || ||||| Sbjct 430042 TCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCAT 430101 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 || ||||| || ||||| || || | || ||||| | | || ||||| || || Sbjct 430102 GAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCC 430161 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 ||||| || || || ||| | | | || | ||||| || || | ||| || Sbjct 430162 GTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGAT 430221 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | | || || || ||||| || ||||| || | |||| || || || ||| | Sbjct 430222 AGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAA 430281 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 || | |||||| || | || || || || | || || ||||| | ||| || || Sbjct 430282 GACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCC 430341 Query 63518 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 ||||||| ||| | |||| | || || || || ||||| || ||||| | Sbjct 430342 GGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGGAGATCATG 430399 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || || || | |||||| |||||||| || ||||| || || |||| | | || Sbjct 430400 GCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGG 430459 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || || |||| ||| | | | ||| || ||||| ||||| || || || ||||| Sbjct 430460 AAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGG 430519 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-----GA-GTCTATATCC 63749 || || | || | || | || ||||||||||| || || || ||| || ||| Sbjct 430520 GTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTC-ATCTCC 430578 Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 | |||| || || ||||||||||| | |||||| || || Sbjct 430579 C-CAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGG 430617 Score = 93.3 bits (102), Expect = 5e-14 Identities = 343/534 (64%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | |||||||||||||| |||| || | | || || || |||||||| Sbjct 428849 TCCTGGTCGACAGTGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 428908 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 || || || || ||||| |||| ||| |||||||| || || | ||| | Sbjct 428909 CCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGAC 428968 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || ||| || ||||| || | || || || |||||||| || || | ||| ||| Sbjct 428969 GGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCA 429028 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||| | | || ||| | || | |||||||||| || || || | ||| || Sbjct 429029 GCCATCTGCACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 62274 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || | || | | | | | ||||| ||||| ||| | || | || || | ||||| Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || | ||| ||| || ||| || || | || || || ||||| || || Sbjct 429149 ATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACC 429208 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||| || |||| | || | || ||| || || ||| || || || | || Sbjct 429209 TGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 429268 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || || |||| || || | || |||||||| ||||| || |||| || || || Sbjct 429269 TCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTG 429328 Query 62511 TTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 || | | ||| || | | |||| || || || || |||||| | ||| || Sbjct 429329 TTGCGGACACCGGTCTCCT-TGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAG 429381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798839308240