Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1786 125 9e-24 seq1963 114 2e-20 >seq1786 Length=271448 Score = 125 bits (138), Expect = 9e-24 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || ||| ||||| ||| ||| |||||||| || | | || | ||||||||| Sbjct 165487 AACAGCAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAG 165428 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| || |||||||| || ||||| || ||||| || |||| || Sbjct 165427 AAGGTCAGGCCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCG 165368 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 ||||| || || || || || |||||||||| |||| || |||| || | Sbjct 165367 CTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 165308 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 | ||| || |||||||| ||||||| ||||||||||| Sbjct 165307 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 114 bits (126), Expect = 2e-20 Identities = 386/595 (65%), Gaps = 16/595 (3%) Strand=Plus/Plus Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070 |||||| || |||| || ||||| | | |||||| |||| | || || || ||||| Sbjct 430042 TCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCAT 430101 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || ||||| || ||||| || || | || | ||| | || || ||||| || || Sbjct 430102 GAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCC 430161 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||||| || || || ||| | | | || ||||| || || | ||| || Sbjct 430162 GTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGAT 430221 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 || | | || || || ||||| || ||||| || | |||| || || || ||| | Sbjct 430222 AGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAA 430281 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 || | |||||| || | || |||||||| || || || || || | ||| || || Sbjct 430282 GACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCC 430341 Query 66311 ACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | ||||| ||| | |||| | || || || || ||||| || ||||| | Sbjct 430342 GGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGGAGATCATG 430399 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || || || | ||| || ||||||||||| || || || ||| |||| | | || Sbjct 430400 GCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGG 430459 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || || |||| ||| | | ||| || ||||| ||||| || || || ||||| Sbjct 430460 AAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGG 430519 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-----GA-GTCTATATCC 66542 || || | || | || | || ||||||||||| || || || ||| || ||| Sbjct 430520 GTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTC-ATCTCC 430578 Query 66543 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 66597 | |||| || || ||||||||||| | |||||| || || | || |||| Sbjct 430579 C-CAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTCGACGA 430628 Score = 93.3 bits (102), Expect = 6e-14 Identities = 343/534 (64%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | |||||||||||||| |||| || | | || || || |||||||| Sbjct 428849 TCCTGGTCGACAGTGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 428908 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 || || || || ||||| |||| ||| |||||||| || || | ||| | Sbjct 428909 CCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGAC 428968 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || ||| || ||||| || | || || || |||||||| || || | ||| ||| Sbjct 428969 GGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCA 429028 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066 ||||| | | || ||| | || | |||||||||| || || || | ||| || Sbjct 429029 GCCATCTGCACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || | || | | | | | ||||| ||||| ||| | || || || || | ||||| Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || | ||| ||| || ||| || || | || || || || || || || Sbjct 429149 ATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACC 429208 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || || |||| | || | || ||| || || ||| || || || | || Sbjct 429209 TGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 429268 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || |||| || || | || |||||||| ||||| || |||| || || || Sbjct 429269 TCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTG 429328 Query 65304 TTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 65356 || | | ||| || | | |||| || || || || | |||||| | ||| || Sbjct 429329 TTGCGGACACCGGTCTCCT-TGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAG 429381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153194677720