Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1540 116 3e-21 >seq1540 Length=209369 Score = 116 bits (128), Expect = 3e-21 Identities = 214/304 (70%), Gaps = 16/304 (5%) Strand=Plus/Plus Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 ||||| ||||| || | ||| || || || || |||||| | ||||| |||||| Sbjct 103456 ACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCATCTTCTTCAGGTCGGCGGGG 103515 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGT--GGGGCCG-CCTGTTAAT-TAGATCCAC 21226 |||||||||| ||| | ||||||||| |||| ||| || |||| | | |||| || Sbjct 103516 TTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTCGTCCTGAGCTTGTGGATC-AC 103574 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 | || || |||||||| || ||||| ||| ||||| ||| || | |||||| Sbjct 103575 CTCGG--CG-AGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCCCTCGCGTCGACGTACTC 103631 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC---CTCGCGGCG 21343 ||||| || || | ||||||||||||||| || || ||||| ||||| ||||||| | Sbjct 103632 GGCCCCGAAGTGGCGCCACTGGAACCCGTAGACGGGGCCCAGGTCGCCCGGCTCGCGGTG 103691 Query 21344 GTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA 21402 | | ||||| ||| | | | | | |||| || |||| ||||||| || || | Sbjct 103692 G----CCTAGCCCGACGCTGTCGAGATACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA 103747 Query 21403 CGCC 21406 |||| Sbjct 103748 CGCC 103751 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 20898 CGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCG 20957 ||||| |||| |||||| | | |||| ||| ||||||| ||| ||||| ||| Sbjct 103177 CGCGGCTCCCTCTCCAGCTGCACCCTGAGGGCATCGACGTGGTCCGCGTAGACGTGCGCG 103236 Query 20958 TCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATAC 21017 || |||| | |||| | | |||||| | ||| | ||||| ||||||| | Sbjct 103237 TCGCCCATGACGTGCGTGAGGCTCCCCGGGATGAGGTCGCACACGTGCGCGATCATGTGT 103296 Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 ||||| || | |||||| |||||||| ||||| || || |||||||||||| ||| | | Sbjct 103297 GTCAGCAGCGAGTAGCTCGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGC 103356 Query 21078 TGGTACAGCTGGCAG 21092 ||||||||||||||| Sbjct 103357 TGGTACAGCTGGCAG 103371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427763576181840