Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1786 159 5e-34 seq1963 125 1e-23 >seq1786 Length=271448 Score = 159 bits (176), Expect = 5e-34 Identities = 340/502 (68%), Gaps = 7/502 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 165769 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTC 165710 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || || |||| || |||| || | |||| | | Sbjct 165709 TCCATGAAGTCGAAGGGGTTGGACGACTTGTAAACCTTGTCGTTGCCCAGGGCGACCAGG 165650 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | || ||||||||||| || || ||||| | | | | ||||| || | || Sbjct 165649 AGGCGGTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGG 165590 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||| |||||| | || | |||||| | || |||| || || || || || || Sbjct 165589 GCACATGGCAGAGCCTCGGTCAAAAATTCCTTCTCGATGGCGACAGCCTCGGTGATGAT- 165531 Query 49909 GATCTA-ACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | || ||| | | ||| || ||| | | | | || |||| || ||| |||| Sbjct 165530 GTCCTGGACGCGCTGCTTG-CTTGGTCGGTTCTTGAGGTGGGAGAACAGCAGACAGGCGA 165472 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | ||| |||||||||||| || | | || ||||||||||| || || || || |||| Sbjct 165471 AGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCA 165412 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || |||||||| || ||||| || ||||| || |||| || |||||||| || | Sbjct 165411 TGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCGCTGAAGAAGATACCCT 165352 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACT 50143 | || |||||||||||||| |||| || |||| ||| ||| ||| || ||||||| Sbjct 165351 CGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCGCGGTCCTGGATCCACT 165292 Query 50144 TTTGAGCCCAATCGGCCTTCTT 50165 | ||||||| ||||||||||| Sbjct 165291 TCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 125 bits (138), Expect = 1e-23 Identities = 390/601 (65%), Gaps = 12/601 (2%) Strand=Plus/Plus Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 ||| | | |||||| || || | || ||||| | | |||||| || | | || || Sbjct 430034 TCGGCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACC 430093 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 80001 || ||||| || ||||| || ||||| || || | || ||||| | || || |||| Sbjct 430094 CGCTTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCC 430153 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061 || || || ||||| || || || ||| | | | || | ||||| || || Sbjct 430154 TCCTTGCCGTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCA 430213 Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121 | ||| || || | | || || || ||||| || ||||| || | |||| || || Sbjct 430214 AGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTA 430273 Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181 || ||| | || | |||||| || | || |||||||| || || || || || | ||| Sbjct 430274 TTGTTAAAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATG 430333 Query 80182 TAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAG 80239 || || ||||||| ||| | |||| | || || || || ||||| || | Sbjct 430334 TATGAGCCGGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGG 430391 Query 80240 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGT 80299 |||| | || || || | ||| || ||||||||||| ||||| || || |||| | Sbjct 430392 AGATCATGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATAT 430451 Query 80300 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 80359 | || || || |||| ||| | | ||| || ||||| ||||| || || | Sbjct 430452 CGACGAGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCG 430511 Query 80360 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 80419 | ||||| || || | || | |||| || ||||||||||| || || || | | Sbjct 430512 AGGCGTGGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGT 430571 Query 80420 C----CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 | || |||| || || ||||||||||| | |||||| || || | || ||| Sbjct 430572 CATCTCCCCAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTCGACG 430627 Query 80476 A 80476 | Sbjct 430628 A 430628 Score = 100 bits (110), Expect = 4e-16 Identities = 357/555 (64%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | |||||||||||||| |||| || | | || || || |||||||| Sbjct 428849 TCCTGGTCGACAGTGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 428908 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 || || || || ||||| |||| ||| ||||||||| || || | ||| | Sbjct 428909 CCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGAC 428968 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || ||| || ||||| || | || || || |||||||| || || | ||| ||| Sbjct 428969 GGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCA 429028 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||| | | || ||| | || | |||||||||| || || || | ||| || Sbjct 429029 GCCATCTGCACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || | || | | | | | ||||| ||||| ||| | || || || || | ||||| Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || | ||| ||| || ||| || || | || || || || || || || Sbjct 429149 ATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACC 429208 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || |||| | || | || ||| || || ||| ||||| || | | Sbjct 429209 TGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 429268 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || || |||| || || | || ||||| || ||||| || |||| || || || Sbjct 429269 TCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTG 429328 Query 79183 TTTCTAAGACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 || | | ||| || | | |||| || || || || | |||||| ||||| || | || Sbjct 429329 TTGCGGACACCGGTCTCCT-TGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAGCGCGGA 429387 Query 79242 CGGGACAACATTCCA 79256 || |||||||| Sbjct 429388 TGGCTTGACATTCCA 429402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718247404568120