Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1808 82.4 6e-11 >seq1808 Length=99283 Score = 82.4 bits (90), Expect = 6e-11 Identities = 165/242 (68%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 42874 CAATCGTC-----GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCA 42928 |||||||| ||| ||||| || | | |||||| || | ||| |||||| || | Sbjct 19309 CAATCGTCTACTGGCCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAA 19368 Query 42929 CATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCT 42988 ||||| || ||||| || || |||| |||| || ||||| || ||||| | ||| | Sbjct 19369 TGTTGTAGTCAGACAAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTT 19428 Query 42989 GTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTG 43047 | || || | || | || || || || |||| || | ||||| || ||| ||| Sbjct 19429 GCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGACGTTGTCAATCGTG 19487 Query 43048 TCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGC 43107 || | ||| || || | ||| ||||| || || || | || ||||||||||| ||| Sbjct 19488 TCCGATGACTCAACCTCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGC 19547 Query 43108 AT 43109 || Sbjct 19548 AT 19549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358523954214