Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1963 156 6e-33 seq1786 120 5e-22 >seq1963 Length=539952 Score = 156 bits (172), Expect = 6e-33 Identities = 327/484 (68%), Gaps = 4/484 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || || || | || ||||| | || || |||||||| ||| Sbjct 430254 CAGGGCGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCAGAC 430195 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || ||| | || ||||||| ||| ||| || ||| |||||| | || Sbjct 430194 GTCTTCGAGTTTCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGAGCCCGTGAT 430135 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || |||||||||| | || ||| ||||||||||||| ||| | | ||| | Sbjct 430134 CTTTTCCTTGCACTCTGGATCCCCGATCTGTTCATGAAGCGGGTCGAGAAGAACGGCGAG 430075 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| | || || || || |||| |||| || || |||||| Sbjct 430074 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGACTTGCCGACTGCTACGGTGAGGAGTTT 430015 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| | |||||| | |||||||| || |||| | || | | Sbjct 430014 GAGGCTCTCTACGAGAAGTACGAGAAGGAGGGCCGCGGTCGCAAGACCA--TGAAGGCCC 429957 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| ||||| | |||||| | ||||||| |||||||| | || | ||| || | Sbjct 429956 AGAAGTTGTGGTACGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTAT 429897 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||| || || ||| || || |||||||| || |||| |||||| |||| | Sbjct 429896 ACAAAGACCACGCGAACCGAAAGAGCAACCAGAAAAACCTGGGTACCATCCGCAGCTCAA 429837 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || || | |||||| | || || ||| || |||||| |||| Sbjct 429836 ACCTCTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCGCTGTTTGCAACCTGG 429777 Query 97354 CATC 97357 | || Sbjct 429776 CCTC 429773 >seq1786 Length=271448 Score = 120 bits (132), Expect = 5e-22 Identities = 201/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| | || || || ||||| | ||| ||| | ||||| Sbjct 164866 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCCGAGGAGATTGATCTC 164925 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||| | ||| |||| || || || | ||| | || Sbjct 164926 TCCAAGGACATGCACGACTGGAGCAACCGTCTGACCGACGACGAACGGTATTTTGTGTCC 164985 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | |||||||| || | || ||||||||||||||||| || || || || Sbjct 164986 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTCGTGGAGCGG 165045 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| | || || |||| ||| ||||| ||||| ||||| |||||||| Sbjct 165046 TTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCATGAT 165104 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | |||||| || ||||| | ||||| Sbjct 165105 GGAGAACATCCACTCAGAGACATACTCTCTCCTCATTGATACCTACAT 165152 Score = 114 bits (126), Expect = 2e-20 Identities = 309/470 (66%), Gaps = 17/470 (4%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| | ||| | |||| | || ||| | ||||||| || || |||||||| || Sbjct 165293 GTGGATCCAGGACCGCGAGTCCACCTATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGA 165352 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| |||||||| || || || ||||||| |||||||||||||| || ||||| Sbjct 165353 GGGTATCTTCTTCAGCGGCGCATTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCAT 165412 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || ||||| | ||||| | || ||||| || ||||| || ||| ||||| Sbjct 165413 GCCTGGCCTGACCTTCTCCAACGAACTGATCTCTCGTGATGAGGGTCTGCACACCGACTT 165472 Query 125570 TGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 ||| ||| ||||| || || || | || | || | ||| | | | Sbjct 165473 CGCCTGTCTGCTGTTCTCCCACCT----------CAAGAACCGACCAAGCAAGCAGCGCG 165522 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 || |||| | ||||| || || || || | || ||| | ||||| | || | Sbjct 165523 TCCAGGACATCATCACCGAGGCTGTCGCCATCGAGAAGGAATTTTTGACCGAGGCTCTGC 165582 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | | | | |||||||||| || || ||| ||||||| || ||||| || | Sbjct 165583 CATGTGCCCTCCTCGGCATGAACTCTAACCTCATGAAGCAGTACATCGAATTTGTCGCCG 165642 Query 125749 ATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTG 125805 | || || ||| || || ||| || |||| ||||||| | || ||||| | Sbjct 165643 ACCGCCTCCTGGTCGCCCTG---GGCAACGACAAGGTTTACAAGTCGTCCAACCCCTTCG 165699 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 165700 ACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 165749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037125699080