Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1811 113 7e-21 seq1553 98.7 2e-16 >seq1811 Length=20981 Score = 113 bits (124), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 2856 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 2798 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| |||||| Sbjct 2797 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCTG 2757 >seq1553 Length=336563 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || |||||||| || ||||||||||| || || Sbjct 75849 GCCAAGCGCCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 75791 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 75790 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 75750 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||| ||| | ||| |||||| || || |||| ||| | Sbjct 75688 TGATCTACGAGGAGACTCGCTCTGTCCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACG 75629 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 75628 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTTGACGTTGTCTACG 75569 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || |||||||||| |||| ||||| || ||||| Sbjct 75568 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTAA 75525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073021206419