Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1786 152 6e-32 seq1963 118 1e-21 >seq1786 Length=271448 Score = 152 bits (168), Expect = 6e-32 Identities = 165/218 (76%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| ||||| ||| |||||||||||| || | | || ||||||||||| Sbjct 165487 AACAGCAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAG 165428 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| || ||||| || ||||||||||||| || Sbjct 165427 AAGGTCAGGCCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCG 165368 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471 |||||||| || || || || |||||||||| |||| || |||| || || Sbjct 165367 CTGAAGAAGATACCCTCGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 165308 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 | ||| || |||||||| ||||||| ||||||||||| Sbjct 165307 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 118 bits (130), Expect = 1e-21 Identities = 387/595 (65%), Gaps = 16/595 (3%) Strand=Plus/Plus Query 63167 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63226 |||||| || |||| || ||||| | | |||||| |||| | || || || ||||| Sbjct 430042 TCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCAT 430101 Query 63227 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 || ||||| || ||||| || || | || ||||| | || || ||||| || || Sbjct 430102 GAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCC 430161 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || || || ||| | | | || | ||||| || || | ||| || Sbjct 430162 GTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGAT 430221 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | | || || || ||||| || ||||| || | |||| || || || ||| | Sbjct 430222 AGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTAAA 430281 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | |||||| || | || || || || | || || ||||| | ||| || || Sbjct 430282 GACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCC 430341 Query 63467 ACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 ||||||| ||| | |||| | || || || || ||||| || ||||| | Sbjct 430342 GGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGGAGATCATG 430399 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 || || || | |||||| ||||| ||||| ||||| || || |||| | | || Sbjct 430400 GCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGG 430459 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 || || |||| ||| | | ||| || ||||| ||||| || || || ||||| Sbjct 430460 AAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGG 430519 Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-----GA-GTCTATATCC 63698 || || | || | || | || ||||||||||| || || || ||| || ||| Sbjct 430520 GTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTC-ATCTCC 430578 Query 63699 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63753 | |||| || || ||||||||||| | |||||| || || | || |||| Sbjct 430579 C-CAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTCGACGA 430628 Score = 93.3 bits (102), Expect = 5e-14 Identities = 343/534 (64%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | |||||||||||||| |||| || | | || || || |||||||| Sbjct 428849 TCCTGGTCGACAGTGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 428908 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 || || || || ||||| |||| ||| |||||||| || || | ||| | Sbjct 428909 CCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGAC 428968 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || ||| || ||||| || | || || || |||||||| || || | ||| ||| Sbjct 428969 GGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCA 429028 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||| | | || ||| | || | |||||||||| || || || | ||| || Sbjct 429029 GCCATCTGCACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || | || | | | | | ||||| ||||| ||| | || || || || | ||||| Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || | ||| ||| || ||| || || | || || || || || || || Sbjct 429149 ATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACC 429208 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || || || |||| | || | || ||| || || ||| || || || | || Sbjct 429209 TGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 429268 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || || |||| || || | || |||||||| ||||| || |||| || || || Sbjct 429269 TCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTG 429328 Query 62460 TTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 62512 || | | ||| || | | |||| || || || || | |||||| | ||| || Sbjct 429329 TTGCGGACACCGGTCTCCT-TGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAG 429381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928643960280