Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1963 223 3e-53 seq1786 154 1e-32 seq1562 138 1e-27 seq1808 123 2e-23 seq1287 93.3 4e-14 >seq1963 Length=539952 Score = 223 bits (246), Expect = 3e-53 Identities = 966/1506 (64%), Gaps = 35/1506 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | |||||| ||| || | ||| || ||| | || Sbjct 429200 TTGACAACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGC 429259 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||||||| || | ||| | ||| |||||||| ||||| Sbjct 429260 TCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGT 429319 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || ||||| | ||| || |||||| | ||||| || | |||| ||||| Sbjct 429320 AACAAGCTGTTGCGGACACCGGTCTCCTTGATCTTGTCCTTGAGGGCTTCCCAGTCCCAG 429379 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 |||| | ||| | || | |||||||||| |||| | ||||||| | | || ||| Sbjct 429380 AGCGCGGATGGCTTGACATTCCACATGTCGAACTGAAGGATGCCCTGTGAGACCGGACTG 429439 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | | | |||| |||| ||||| | |||| || ||||| Sbjct 429440 CCCTCGTACGTCTTGTACGGGCCCTCCACCTTGGCAATATCGCTTGATGCGGTAAGAGCA 429499 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || || || |||||| || ||| |||| ||| || || | ||| | Sbjct 429500 GCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAGCTCACGGGCCTCGGGGGAGTCGAAA 429559 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 ||||| || || | || ||||| || || ||||| | || || || || || ||| Sbjct 429560 GGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGACACCAACACCAATCGGTCGA 429619 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 ||| ||||||||| | ||| || || || || | || || || || || Sbjct 429620 TGTCGCATGTTGCTGTTGTAGGCCTCCTTGACTGGGTAGTGGTTGACATCAATGATCTTG 429679 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCC 145597 |||| ||| || || || |||| |||| | |||||| || |||| | | Sbjct 429680 TTCAGGTTGCGGACGACGACCTGGGTAACCTCATGCAACTGTTGGAAGTTGTAGCAGTTG 429739 Query 145598 TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 | |||| | |||| | | ||| || || |||| || ||||| || ||| Sbjct 429740 TTGTCATAGTCCACGTACGCCGGCAGGGCAATAGAGGCCAGGTTGCAAACAGCGACCTCA 429799 Query 145658 TCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGGTTCCC 145714 || | | | | ||| | | |||||| | ||| | || ||| | |||||| ||| Sbjct 429800 TCAGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTTGAGCTGC---GGATGGTACCC 429856 Query 145715 AGATTTTGCTGATTACTTTTCCTGTTGCACG-CGTCCTTGTAGAGCATGTACGGTCCGCC 145773 || |||| ||| || || || | ||| | || ||| ||||| |||||| | || ||| Sbjct 429857 AGGTTTTTCTGGTTGCTCTTTCGGTT-CGCGTGGTCTTTGTATAGCATGAAGGGGTTGCC 429915 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTG 145833 |||||| ||| | ||| | ||| ||| | ||| || || || | || Sbjct 429916 AGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAACTTCTGGGCCTTCA--TGGTCTTG 429973 Query 145834 GTA--GCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAA 145891 | ||||||||| | ||||| ||| |||||| |||||||| | ||||||||| Sbjct 429974 CGACCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAG 430033 Query 145892 TCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACG 145951 |||| || || || |||| ||||| ||||| || | ||| ||||||| | ||| Sbjct 430034 TCGGCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACC 430093 Query 145952 CGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCC 146011 |||| ||| |||| ||| || | ||| || || | | || || ||| | ||| Sbjct 430094 CGCTTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCC 430153 Query 146012 TCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTT 146069 || || ||| | || || | ||| | ||| ||| ||| |||||||| || | Sbjct 430154 TCCTTGCCGTGGTTCTTGC-GCAGGTCAAG-AAACTCGAAGACGTCTGCGTGCCATGGCT 430211 Query 146070 CAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTACCA 146126 ||| |||| |||| ||| || || ||||| |||||||| || | || | Sbjct 430212 CAAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAG 430271 Query 146127 TGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA-GAG--- 146182 | ||||||||||| |||| |||||| || ||| ||| |||||| ||| || Sbjct 430272 TATTGTTAAAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGA 430331 Query 146183 TTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC-GCCGCCGTA 146241 | ||| | |||| || || | | || || || | ||||| ||| ||||| | Sbjct 430332 TGTAT----GAGCCGGTGGCACGGATACGGTGGACGTTGAGGCCGATACCTCCCGCCAT- 430386 Query 146242 CTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTT 146299 |||||| || ||| ||| |||||| ||||||||||| |||||||| || ||| Sbjct 430387 CTTGGAGATCATGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTT 430446 Query 146300 CGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAAC 146359 | || ||| || |||||||| ||| ||| | | || || || || ||| || Sbjct 430447 C--ATATCGACGAGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAAT 430504 Query 146360 GTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCT 146419 || || ||||| || || | || | ||||| ||||| ||||| | ||| Sbjct 430505 GTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGAT-GACTCT 430563 Query 146420 -TGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 | | ||| || || ||||| | |||||| ||||||| ||||||||| |||||||| Sbjct 430564 CTCGACGTCATCTCCCCAGATGCCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTC 430623 Query 146479 CGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAAA 146538 | |||| | ||| | ||| | || || | ||| ||||| ||| | ||||| | Sbjct 430624 GACGACTTTACCGTCGAGCTTCAGCAGGTATGAGCGCTCGAGGGTCTTGAAGCCGAAGTA 430683 Query 146539 TTTGTA 146544 || ||| Sbjct 430684 TTGGTA 430689 >seq1786 Length=271448 Score = 154 bits (170), Expect = 1e-32 Identities = 352/519 (68%), Gaps = 23/519 (4%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG--- 46143 || ||| | |||||||| |||||||||| ||||||||||| ||| |||||| Sbjct 165258 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATC-----CAGGACCGCGAGT 165312 Query 46144 --ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 || | ||| |||| |||| |||||||| || ||||| |||| || ||| Sbjct 165313 CCACCTATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCG 165372 Query 46202 GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGC 46260 || || ||||||| | |||| || | |||| ||||||| |||||||| || | Sbjct 165373 CATTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGGC-TCATGCCTGGCCTGACCTTCTCC 165431 Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAA 46319 ||||| ||||| || || || ||||| ||||| || ||||| || ||||| || | | Sbjct 165432 AACGAACTGATCTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCC 165491 Query 46320 CA-CTCGCGTGCACGA-CAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCG 46377 || ||| | | ||| ||||| || | ||| | | ||| ||| ||||| Sbjct 165492 CACCTCAAGAAC-CGACCAAGCAAGC-----AGCGCGTCCAGGACATCATCACCGAGGCT 165545 Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC 46437 || ||||| |||||||| ||||| || | || ||||| |||||| || ||||||||| Sbjct 165546 GTCGCCATCGAGAAGGAATTTTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAAC 165605 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 | | ||| | |||||||| ||||| || ||||| || || || | | | Sbjct 165606 TCTAACCTCATGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGT-CGCCCTGGG 165664 Query 46498 CAGCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 || | | ||| || | || ||| || || || || ||| | ||||||||||| | Sbjct 165665 CAACGACAAGGTTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGG 165724 Query 46557 GGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || ||||| ||||| ||||| || || Sbjct 165725 TGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 165763 >seq1562 Length=24550 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19559 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || || || || || || ||||| |||||||||| Sbjct 19560 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGA 19608 >seq1808 Length=99283 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||| || ||||| ||||||||||| ||| Sbjct 19779 CCACCACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 19838 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || |||||||| || |||| | ||||| ||||| || ||| Sbjct 19839 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGG 19898 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | |||||||| |||||| | Sbjct 19899 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAACC 19958 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || ||||| || || |||||||| ||||||||| Sbjct 19959 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCATG 20006 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||||||||| || | ||| ||| |||||| |||||||| || Sbjct 19581 GTAGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGCCCGTCCTCAAGCTGCTTTCCA 19640 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || ||||||||||| |||||||| || || || || ||| ||| ||| Sbjct 19641 GCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTC 19700 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | |||||| | ||||| | |||| ||||| ||| || || || ||||| Sbjct 19701 ACATTGTCGATAGTATCAGAAGACTCAACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTC 19760 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 19761 TTGACGAAGATCTGCAT 19777 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| || || | || |||||||| ||||||||||| || Sbjct 19322 GCCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGA 19381 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || ||||||||||| ||| | || | || |||||||| || || Sbjct 19382 CAAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGG 19441 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | || || | ||||| | Sbjct 19442 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAAC 19501 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| |||| || || || || | || || || |||||||||||| || Sbjct 19502 CTCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCATGCCT 19553 >seq1287 Length=86926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| ||| Sbjct 66491 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66550 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || || ||||| || ||||| ||| || ||||| | | Sbjct 66551 TCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 66610 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||| | || | ||| | || || || || || || || |||| Sbjct 66611 CGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 66670 Query 131225 A 131225 | Sbjct 66671 A 66671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998739918720