Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq432 143 2e-29 seq1808 105 4e-18 >seq432 Length=96576 Score = 143 bits (158), Expect = 2e-29 Identities = 209/293 (71%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCG-CATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 ||| | ||||| |||||||| ||| ||| | || | ||||||||||||| ||||| || Sbjct 6810 GACCCCTTCTATCGCTACAAGATGGAGCGTCTTCAGA-CCAAGGTCGAGGGCAAGGGCAA 6752 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || |||||||| |||||| || | ||||| || | |||| ||||| | Sbjct 6751 CGGCATCAAGACCGTCATCGTCAACCTGACAAGCGTCGCCCAGTCCCTCGCCCGCCCCGG 6692 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | ||||| || || || ||||| | ||| |||||||||||||| | | || | ||| Sbjct 6691 CTCCTACTTGATCAAGTACTTCGGCTTCGAGCTTGGCGCTCAGACCAACATCGACCCCAA 6632 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 | || || | ||| | ||||| | || | ||| ||||||| |||||| | ||||| Sbjct 6631 GGATGATCGTTGGATCATCAACGGTGCCCACGAGTCTCCCAAGCTCCAGGACCTCCTTGA 6572 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||| || | ||| || ||||| | | ||| | ||||| ||||||| Sbjct 6571 TGGCTTCATCAAAAGGTTCGTCCTGTGCCACAAGTGCAAGAACCCCGAGACCG 6519 >seq1808 Length=99283 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||||| || || ||| |||||| ||||| ||||| |||||| Sbjct 19323 CCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAC 19382 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || |||| || | || || || || || || || ||||| || || | ||| Sbjct 19383 AAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGG 19442 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || ||| || || | | || || ||||| Sbjct 19443 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAACC 19502 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || ||||||||||| ||||| || ||||||||| Sbjct 19503 TCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCATG 19550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937472191273