Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1786 132 6e-26 seq1963 131 2e-25 >seq1786 Length=271448 Score = 132 bits (146), Expect = 6e-26 Identities = 334/502 (67%), Gaps = 7/502 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| ||||| ||||| || ||||| || || || || || | | || || || Sbjct 165769 TTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTC 165710 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| ||||| || |||| || |||| || | |||| | | Sbjct 165709 TCCATGAAGTCGAAGGGGTTGGACGACTTGTAAACCTTGTCGTTGCCCAGGGCGACCAGG 165650 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | || ||||||||||| || || ||||| | | | | ||||| || | || Sbjct 165649 AGGCGGTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGG 165590 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||| |||||| | || | |||||| | || || | ||| || || || || || Sbjct 165589 GCACATGGCAGAGCCTCGGTCAAAAATTCCTTCTCGATGGCGACAGCCTCGGTGATGAT- 165531 Query 32610 GATCTT-ACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 | || || | | ||| || ||| | | | | || |||| || ||| |||| Sbjct 165530 GTCCTGGACGCGCTGCTTG-CTTGGTCGGTTCTTGAGGTGGGAGAACAGCAGACAGGCGA 165472 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | ||| ||| |||||||| || | | || | ||||||||| || || || || |||| Sbjct 165471 AGTCGGTGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCA 165412 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | || |||||||| || ||||| || ||||| || |||| || ||||| || || | Sbjct 165411 TGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCGCTGAAGAAGATACCCT 165352 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACT 32844 | || || |||||||||| |||| || |||| || ||| ||| || ||||||| Sbjct 165351 CGACGGCGGCAAAGGCAACCAGTCGCTGGGCATAGGTGGACTCGCGGTCCTGGATCCACT 165292 Query 32845 TTTGAGCCCAATCGGCCTTCTT 32866 | ||||||| ||||||||||| Sbjct 165291 TCAGAGCCCAGTCGGCCTTCTT 165270 >seq1963 Length=539952 Score = 131 bits (144), Expect = 2e-25 Identities = 391/597 (65%), Gaps = 16/597 (3%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 |||||||| || |||| || ||||| | | |||||| |||| | || || || ||| Sbjct 430040 AGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTC 430099 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || ||||| || ||||| || || | || ||||| | || || ||||| || Sbjct 430100 ATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTG 430159 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || || ||| | | | || | ||||| || || | ||| Sbjct 430160 CCGTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAG 430219 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 || || | | || || || ||||| || ||||| || | |||| || || || ||| Sbjct 430220 ATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGACATATCGGGCAGTATTGTTA 430279 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | |||||| || | || |||||||| || || || || || | ||| || Sbjct 430280 AAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAG 430339 Query 63320 CCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| ||| | |||| | || || || || ||||| || ||||| | Sbjct 430340 CCGGTGGCACGGATACGGTGGACGTTGA--GGCCGATACCTCCCGCCATCTTGGAGATCA 430397 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || || | ||| || ||||||||||| || || || ||| |||| | | | Sbjct 430398 TGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGA 430457 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || |||| ||| | | ||| || ||||| ||||| || || || |||| Sbjct 430458 GGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGT 430517 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT-----GA-GTCTATAT 63551 | || || | || | || | || ||||||||||| || || || ||| || | Sbjct 430518 GGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTC-ATCT 430576 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 ||| |||| || || ||||||||||| | |||||| || || | || |||| Sbjct 430577 CCC-CAGATG----CCGACAGCGACACGCATGATCATGTGTTGTGGCCGCTCGACGA 430628 Score = 98.7 bits (108), Expect = 1e-15 Identities = 344/534 (64%), Gaps = 5/534 (1%) Strand=Plus/Plus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||| | |||||||||||||| |||| || | | || || || |||||||| Sbjct 428849 TCCTGGTCGACAGTGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATG 428908 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 || || || || ||||| |||| ||| |||||||| || || | ||| | Sbjct 428909 CCAGTCTTGAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGAC 428968 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || ||| || ||||| || | || || || |||||||| || || | ||| ||| Sbjct 428969 GGCTCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCA 429028 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||| | | ||| ||| | || | |||||||||| || || || | ||| || Sbjct 429029 GCCATCTGCACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || | || | | | | | ||||| ||||| ||| | || || || || | ||||| Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || | ||| ||| || ||| || || | || || || || || || || Sbjct 429149 ATGGCCTCAGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACC 429208 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || || || |||| | || | || ||| || || ||| || || || | || Sbjct 429209 TGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCAC 429268 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || || |||| || || | || |||||||| ||||| || |||| || || || Sbjct 429269 TCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTG 429328 Query 62315 TTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 62367 || | | ||| || | | |||| || || || || | |||||| | ||| || Sbjct 429329 TTGCGGACACCGGTCTCCT-TGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAG 429381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633613125686800