Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1808 136 3e-27 seq1287 102 7e-17 >seq1808 Length=99283 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || ||||||| || || || || || Sbjct 20005 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCCTCC 19946 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || ||||| |||||||||||||| || || || ||| Sbjct 19945 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAA 19886 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| || | |||||| ||| ||| ||||||| |||||| Sbjct 19885 CAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTACAAC 19826 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||||||| | || | ||| | || |||| || ||| Sbjct 19825 ATTCAGAAGGAATCCACCCTTCACCTCGTTCTCCGTCTGCGTGGTGGT 19778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || | || || || || || | | Sbjct 19549 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATCG 19490 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || ||||| || || Sbjct 19489 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 19430 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||| ||| | || || ||| || | || || |||||| Sbjct 19429 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAAC 19370 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 19369 ATTCAGAAGGAGTCCAC 19353 >seq1287 Length=86926 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| ||||| || |||| ||| | ||| | |||| Sbjct 66656 ACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCCGACACCATCGACAACGTCAAGTCC 66597 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || || |||||||| Sbjct 66596 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGCAAG 66537 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 66536 CAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 66493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715809918395