Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1786 122 2e-22 seq1769 100 6e-16 seq1558 84.2 4e-11 >seq1786 Length=271448 Score = 122 bits (134), Expect = 2e-22 Identities = 248/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 165745 TCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAC 165686 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| |||| | ||| || || || | || |||||| || ||||| || | Sbjct 165685 GACTTGTAAACCTTGTCGTTGCCCAGGGCGACCAGGAGGCGGTCGGCGACAAATTCGATG 165626 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | |||||||||||| | | ||| || | ||||| | Sbjct 165625 TACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGGGCACATGGCAGAGCCTCGGTCAAA 165566 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTG--TGCCAGAG 251797 |||||||| ||| |||| || ||||| | || ||| || ||| ||| | Sbjct 165565 AATTCCTTCTCGATGGCGACAGCCTCGGTGATGATGTCCTGGACGCGCTGCTTGCTTG-- 165508 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 | ||||| || | ||| |||| || | | || | |||||||||||| | Sbjct 165507 ---GTCGGTTCTTGAGGTGGGAGAACAGCAGACAGGCGAAGTCGGTGTGCAGACCCTCAT 165451 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| ||| | |||||||| | |||||||||||| | |||||| ||| |||||| Sbjct 165450 CACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCATGAGCCCACGCTTCTTGAGCC 165391 Query 251918 AGAAGAT 251924 ||||||| Sbjct 165390 AGAAGAT 165384 >seq1769 Length=80265 Score = 100 bits (110), Expect = 6e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || |||||||| || || ||||| ||||| || |||| ||||||||||| ||| || Sbjct 73648 GACCTGTGTGAGTGCGAGTTCTCCCTCGCCTACGGTGCCAAGATTCTGCTCAACAACACT 73589 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 ||| || | ||||||||||| || || ||||| ||||||||| || || || ||| Sbjct 73588 CGCATCCGCCTCAAGCGTGGCCGTCGTTACGGTCTGTGCGGTCCCAACGGTGCTGGAAAG 73529 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGA 279529 || || ||||| ||||| |||| || | | ||| ||||| | ||| || Sbjct 73528 TCTACCCTCATGCGTGCCATCAACAACGAGCAAGTCG-AGGGTTTCCCCAAGCAGAGCGA 73470 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 ||| | ||| |||| || ||||||||| | ||| Sbjct 73469 GGTCAAGACTGTGTTCGTGGAGCACGACCTTGAC 73436 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 |||||||||| || ||||| || || || ||| ||||| ||||| | | || Sbjct 72252 CTCACTCTCGTATGAAGGGTCTGTCCGGTGGTCAGCGTGTCAAGGTTGTCCTGGCCGCTT 72193 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| |||||| ||||||| |||||||||||||||||||| || ||||| Sbjct 72192 GCTCT-TGGCAACGACCTCACCTGATCGTCCTCGACGAGCCTACCAACTACCTTGACCGT 72134 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || || |||||| Sbjct 72133 GACTCTCTCGGTGCTCTG 72116 >seq1558 Length=180987 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || |||||||| ||||||||||||||||| || || | | ||||| || | | Sbjct 166783 GTTGGCTCCCTGTCGGGAGGTTGGAAGATGAAGCTCGCTCTGGCCAGGGCCATGCTGCAG 166842 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 ||||||||||| ||||| || ||||| || |||||| |||| Sbjct 166843 AAGGCCGATGTCCTGCTGCTGGACGAGCCGACTAACCACTTGGA 166886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027805417894103