Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1562 187 5e-42 seq1808 167 4e-36 seq1287 138 2e-27 seq1769 123 5e-23 seq1786 118 2e-21 seq1690 109 1e-18 seq1320 95.1 2e-14 >seq1562 Length=24550 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 19559 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||||||||| ||||| |||||||| ||| Sbjct 19560 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19610 >seq1808 Length=99283 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| ||||||||||| || || ||||| || || || Sbjct 19323 CCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAC 19382 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||| || ||||| | |||||| || ||||| ||||||| ||| ||||| ||||| Sbjct 19383 AAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGG 19442 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | ||| || || Sbjct 19443 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGATGACTCAACC 19502 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || ||||| | |||||| || || |||||||| Sbjct 19503 TCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 19549 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || || || ||||| || |||||| Sbjct 19779 CCACCACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 19838 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | |||||||| || || Sbjct 19839 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGG 19898 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || || || || | || || || Sbjct 19899 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAACC 19958 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 19959 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 20005 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | |||| ||| || || || || || || ||||| || || ||| Sbjct 19551 CCTCCACGGAGGCGGAGAACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTCCGAG 19610 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||| || || | |||||| || || || || | | || ||||| || || Sbjct 19611 AGGGTCCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGG 19670 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | ||| || ||||| || || | || || || Sbjct 19671 ATGCCCTCCTTATCCTGGATCTTCGACTTCACATTGTCGATAGTATCAGAAGACTCAACC 19730 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 19731 TCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 >seq1287 Length=86926 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 66493 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66552 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || ||||| || |||||||| || ||||| | ||||||| ||| Sbjct 66553 AATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 66612 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || ||||| |||||||| ||||| Sbjct 66613 ATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 66671 >seq1769 Length=80265 Score = 123 bits (136), Expect = 5e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| || | | | | ||||||| |||||| |||||| |||| ||| || || | Sbjct 73415 GGTCATCTCTGTGTCGGCAGCGTCAAGGTCGTGCTCCACGAACACAGTCTTGACCTCGCT 73474 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||| ||||| | || | || || ||||| | |||||| ||| | Sbjct 73475 CTGCTT-GGGGAAACCCTCGACTTGCTCGTTGTTGATGGCACGCATGAGGGTAGACTTTC 73533 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 | || |||||||||||| || |||||| || || ||||||| | || ||| ||| Sbjct 73534 CAGCACCGTTGGGACCGCACAGACCGTAACGACGGCCACGCTTGAGGCGGATGCGAGTGT 73593 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 ||| || || |||||| |||| ||||| |||||||||||||| || |||||||| Sbjct 73594 TGTTGAGCAGAATCTTGGCACCGTAGGCGAGGGAGAACTCGCACTCACACAGGTC 73648 >seq1786 Length=271448 Score = 118 bits (130), Expect = 2e-21 Identities = 178/249 (71%), Gaps = 12/249 (5%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| ||||||||||| || || || |||||||||||||| |||||| | Sbjct 165782 CATGACGCCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 165723 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGGGT 10050 |||||| ||| |||||||||||| |||||||| | || | |||| |||| || Sbjct 165722 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG--GACGACTTGTAAAC--CTTGTCGT 165667 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110 || || || | | |||||| || || || ||||||||||| |||| |||| | Sbjct 165666 TGCCCAGGGCGACCAGGAGGCGGTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAG 165607 Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCG--CAAATGAAGTCCTTTTCGTTGGC 10168 |||||||||| | | | || || | || ||| |||| || ||||| ||| |||| Sbjct 165606 AGTTCATGCCGAGGAGGGCACATGGCAGAGCCTCGGTCAAA--AATTCCTTCTCGATGGC 165549 Query 10169 GACCGCTTC 10177 ||| || || Sbjct 165548 GACAGCCTC 165540 >seq1690 Length=61134 Score = 109 bits (120), Expect = 1e-18 Identities = 261/387 (67%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 173086 CCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAA 173145 |||| ||| | | || || ||||| || | |||||||| |||||| |||| || ||| Sbjct 26702 CCTGGAGCGGTACAACATCGACACAATCTTCCACTTTGCAGCGCAGTCCCACGTCGACCT 26761 Query 173146 CTCGTTCGGTAACTCGCTGGCATTTAC-CATGAACAACGTCTACGGGACCCACGTTCTCC 173204 || || |||||| | || || ||| | |||||| ||||| |||||||| |||| Sbjct 26762 GAGCTTTGGCAACTCGTACGGCTTCACGCAT-ACCAACGTGTACGGAACCCACGTGCTCC 26820 Query 173205 TGGAATGCGCGAGGCTCTATGGCGGTG-TCCAGCGGTTCATCAATGTGTCTACCGACGAA 173263 ||||| | || | | | || || | || ||||||||||| | | || || ||||| Sbjct 26821 TGGAAAGTGCCAAG----AAGGTGGGGATCAAGCGGTTCATCCACATCTCGACGGACGAG 26876 Query 173264 GTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCG-TCCCTCGA 173322 || ||||||||| || || | | | || | |||| | | || | ||| | Sbjct 26877 GTGTACGGCGAGGTCA---AGGACGACGATGACGACCTC-CTCGAGTCTAGCATCCTGGC 26932 Query 173323 GCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCA 173382 || || ||||| || || || ||||||| | || || ||| ||| | | || || Sbjct 26933 CCCGACCAACCCGTACGCGGCGTCCAAGGCCGCGGCAGAGATGCTGGTGCACTCGTACCA 26992 Query 173383 CACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCA 173442 | | |||||| || |||||| | |||| ||||||| ||||| || ||||| || Sbjct 26993 GAAGAGCTTCAAGCTGCCCGTCATCATCGTGCGCAGCAACAACGTGTACGGGCCGCACCA 27052 Query 173443 GTTCCCCGAAAAAATGATCCCAAAATT 173469 || ||| || || || ||||| || || Sbjct 27053 GTACCCGGAGAAGATCATCCCCAAGTT 27079 >seq1320 Length=134731 Score = 95.1 bits (104), Expect = 2e-14 Identities = 212/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || ||||| ||| |||||||| || || ||||||| |||| || Sbjct 17332 CCAGTGTGCACATCCTCAGAGAACCCAATCTCCGCCGTACCGCCGACCTCCTCAAGAGCA 17391 Query 59357 TCTCGGCGGTAGACTGCGCATG--TCCCGACGCACACGG-CGCCGCCAAAGGTGTCGCGA 59413 | || || || | ||||| ||||||| || | | |||| || | |||| | Sbjct 17392 GCACGACGATACAA--CGCATTACTCCCGACACAGATGCTCGCCCCCCACC-TGTCCCTG 17448 Query 59414 GAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAA 59473 |||||| | | ||||||||||| ||||| | || || | |||| ||||| Sbjct 17449 TTAACCTGAACAACGCGGTAGAACAGCTCCTGCGTCGCGCCGGCCCCCTGCTCGACCCAC 17508 Query 59474 GTCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCA 59533 ||||| ||| || ||||||||| ||| ||||||| || || | |||| |||| Sbjct 17509 GTCTGCTCGTCAGTGACGCGGAAGAACTGCGGGCTCTGCACGATGGCAACCTTGTCGTCG 17568 Query 59534 TGGGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCG 59593 | | | | ||||| ||||| ||| |||| ||||||| || ||||| || ||| Sbjct 17569 TCGAGCTGCTCGACCATGAGCTCCTTCAGGAAGTCCGGGCGCGCGCAAAAGTCCGCGTCG 17628 Query 59594 AAGATGGCAAAGAA 59607 |||||||| ||||| Sbjct 17629 AAGATGGCGAAGAA 17642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921594947172760