Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1963 372 6e-98 seq1786 306 7e-78 >seq1963 Length=539952 Score = 372 bits (412), Expect = 6e-98 Identities = 1223/1889 (65%), Gaps = 69/1889 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 |||| || | ||||||| | || |||| || | |||||||||||||| |||||||| | Sbjct 428862 TGAATTGAATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATGCCAGTCTTGAGGC 428921 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| || || |||||| || | ||| ||| || || Sbjct 428922 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCAT-----------GGACGG 428970 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | || | || || |||||| |||||| |||||||| ||| | | || || || | Sbjct 428971 C-TCTCGCATGTGGATGTTGAGTGACTGGGACTGGTCGATGAATGCACCACGGTCAGCAG 429029 Query 243921 CCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| | | ||||| |||||| || || | | |||||||| | || ||||| | Sbjct 429030 CCATCTGCACAATAGTCCT-CTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATG 429088 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | | |||| | |||||||| | || || | | | |||||| || | | Sbjct 429089 TCAGCCGGGATGCTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTC 429148 Query 244040 ATGTTATCGTTCCACAGGCCCAAGCGCT--CCAGCGCCTCGACCAGGTGCCTGTTCACCA 244097 ||| || ||||| ||| | || || | || ||| || || ||| || | Sbjct 429149 ATGGCCTCAGACCACAAGCCGA-GCTCTGTCAAGTCCCT-GAGAAGCCAAGGGTTGACAA 429206 Query 244098 CCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGC 244157 |||| ||||| || | ||||| || |||||||||| |||| | || ||||||| || Sbjct 429207 CCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGC 429266 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| |||||||||| ||||||| ||| ||||| ||||| |||| || | || | Sbjct 429267 ACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGC 429326 Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCG 244277 |||| | || ||| | || ||| | |||| | | ||||||||| | || || Sbjct 429327 TGTTGCGGACACCGGTCTCCTTGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGA-GCGCG 429385 Query 244278 AGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGC 244337 || | | | | || ||||||||| ||||| || | |||| ||| || | Sbjct 429386 -GATGGCTTGACATT-------CCACATGTCGAACTGAAGGATGCCCTGTGAGACCGGAC 429437 Query 244338 TGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG---A 244394 |||||||||| ||| ||| || || || || ||| | || ||| || | Sbjct 429438 TGCCCTCGTACGTCTTGTACGGGCCCTCCACCTTGGCAA---TATCGCTTGATGCGGTAA 429494 Query 244395 GGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGG 244454 | || |||| |||||| |||||||||||| |||||||| || ||||||| | | || Sbjct 429495 GAGCAGCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAGCTCACGGGCCTCGGGGGAGT 429554 Query 244455 TGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGG 244514 ||| || || | | || ||| | || || || ||||| || || | || || | Sbjct 429555 CGAAAGGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGACACCAACACCAATCG 429614 Query 244515 GTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCA 244574 ||| |||||| ||||| | ||| || || ||||| |||| | || || | Sbjct 429615 GTCGATGTCGCATGTTGCTGTTGTAGGCCTCCTTGACTGGGTAGTGGTTGACATCAATGA 429674 Query 244575 CCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACT 244634 |||||| ||||||||| || | || || || || | | || |||| ||| Sbjct 429675 TCTTGTTCAGGTTGCGGACGACGACCTGGGTAACCTCATGCAACTGTTGGAAGTTGTAGC 429734 Query 244635 CGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGT 244694 || | || | | | ||| || | ||||| | |||||||| Sbjct 429735 AGTTGTTGTCATAGTC------------CACGTACGCCGGCAGGGCAATAGAGGCCAGGT 429782 Query 244695 TGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGC 244754 |||| || || ||||| || | | ||||| || ||||| ||||||||||| || Sbjct 429783 TGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTTGAGC 429842 Query 244755 ACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCA 244814 |||||| ||||||| | || ||| ||| ||| | ||| ||||| |||| Sbjct 429843 TGCGGATGGTACCCAGGTTTTTCTGGTTGCTCTTTCGGTTCGCGTGGTCTTTGTATAGCA 429902 Query 244815 TGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCT 244874 ||||||| || |||||| ||| || |||||| | || ||| | | | |||| Sbjct 429903 TGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGTACCACAACTTCTGGGCCT 429962 Query 244875 TGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGG 244934 | | ||| ||||| | |||||| |||||| ||| || ||||| ||||| Sbjct 429963 TCATGGTCTTGCGACCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCT 430022 Query 244935 GGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 || || ||| | || || |||||| ||||||||||| ||||||||||| Sbjct 430023 CACCGTAGCAGTCGGCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGT 430082 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 | || ||||| || |||||| || |||||||||||||| || |||| || || | || Sbjct 430083 TCTTCTCGACCCGCTTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGG 430142 Query 245055 TCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGAC 245112 ||| | ||| ||| ||| |||||| | ||| || | ||| || |||||||| | Sbjct 430143 --CTCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGC 430200 Query 245113 GTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||||| ||||| | ||||| ||||| ||| ||||| ||||||||||| |||||||| | Sbjct 430201 GTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGA- 430259 Query 245173 CATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | | ||| || ||| |||| |||| | || ||||| || || || Sbjct 430260 ---CATATCGGGCAGTATTGTTAAAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGC 430316 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTA 245285 |||| || || |||||| | ||| || | | || ||| | | || | ||| | Sbjct 430317 CGTTAGTACCAGCGATGTATGAGCCGGTGGCACGGATACGGTGGACGTTG---AGGCCGA 430373 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || || || ||||||||| | ||| ||| |||||| ||||| |||||||| | Sbjct 430374 TACCTCCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAA 430433 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 |||||||| |||||| | || || ||||| || ||||||||||||| ||| ||| | Sbjct 430434 TGCTGTCCTCCTTCATATCGACGAGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAG 430493 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 ||||| | ||||| ||||||||| ||| | | | || | | |||||||| Sbjct 430494 CATTGAATAATGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCT 430553 Query 245466 GGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCT 245525 || | |||| || || || ||| | ||| | ||||| |||| | Sbjct 430554 CGATGACTCTCTCGACGTCATCTCCCCAGATGCCGACAGCGACACGCATGATCATGTGTT 430613 Query 245526 GGGGCGTCTCGATGGGT---CCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCT 245582 | ||| ||||| | | || ||| | ||| |||| ||| ||||||||||| |||| Sbjct 430614 GTGGCCGCTCGACGACTTTACCGTCGAG---CTTCAGCAGGTATGAGCGCTCGAGGGTCT 430670 Query 245583 TGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 |||| || ||||| |||||| || ||| Sbjct 430671 TGAAGCCGAAGTATTGGTAGCCGAAATCG 430699 >seq1786 Length=271448 Score = 306 bits (338), Expect = 7e-78 Identities = 378/514 (74%), Gaps = 5/514 (1%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || || |||||| || | ||| | || Sbjct 165258 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCCACC 165317 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | | | || | ||||| |||||| ||||||||||||| ||||||||| ||||| ||| Sbjct 165318 TATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTC 165377 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || |||||||||||||||||| || | | ||||| || || |||||||| |||||| Sbjct 165378 GCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAA 165437 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || ||| | || ||||| ||||| | ||||| ||||| || |||||||| |||| Sbjct 165438 CTGATCTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTC---CCAC 165494 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 |||| | || || ||| |||| |||| || ||||||||| ||||| || | ||| Sbjct 165495 CTCAAGAACCGACCAAGCAAGCAGCGCGTCCAGGACATCATCACCGAGGCTGTCGCCATC 165554 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCT 42991 |||||||| || | || || | ||||| ||| |||| ||||||||||| |||| Sbjct 165555 GAGAAGGAATTTTTGACCGAGGCTCTGCCATGTG-CCCTCCTCGGCATGAACTCTAACCT 165613 Query 42992 CATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG 43051 |||| |||||||| | | |||||||||| |||||| | |||| | | Sbjct 165614 CATGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAACGACAA 165673 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 | ||||| || | |||||||||||| |||||||||||||| | | |||||||| Sbjct 165674 GGTTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGAC 165733 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| ||||||||||| |||| ||||||||| Sbjct 165734 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 165767 Score = 120 bits (132), Expect = 6e-22 Identities = 217/310 (70%), Gaps = 13/310 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||| || || | || |||||| |||||||||||||| || Sbjct 164866 ATCTGGCAAATGTACAAGAAGCACGAAGCT-TCTTTCTGGACTGCCGAGGAGATTGATCT 164924 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414 ||||||||| | || |||| || || |||||| || ||||| || ||| | Sbjct 164925 CTCCAAGGACATGCACGACTGG-AGCAACCGTCTGACCGACGACGAACGGTATTTTGTGT 164983 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || ||||||||||| || || || || || ||||| |||||||| | Sbjct 164984 CCCACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTCGTGGAGC 165043 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||| ||||| ||| | ||||| || |||||||||||||||||||| | Sbjct 165044 GGTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGA 165103 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||| ||| ||| | || |||| | || |||||| ||| | Sbjct 165104 TGGAGAACATCCACTCAGAGACATACTC---TCTCCTCATTGATACCTACATCAAGGAGC 165160 Query 42592 CCGTCGAGCG 42601 ||| | |||| Sbjct 165161 CCGCCCAGCG 165170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311070496080