Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1963 241 1e-58 seq1786 127 2e-24 seq1808 109 5e-19 seq1562 104 2e-17 >seq1963 Length=539952 Score = 241 bits (266), Expect = 1e-58 Identities = 1002/1552 (65%), Gaps = 53/1552 (3%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || |||||||| || | ||| |||| | || | ||| ||| | | Sbjct 429198 GGTTGACAACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATG 429257 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || || || | |||| ||| || ||||| ||||| Sbjct 429258 GCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCA 429317 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 ||||| || || | ||| | | || | |||||| | || | ||| |||| Sbjct 429318 GTAACAAGCTGTTGCGGACACCGGTCTCCTTGATCTTGTCCTTGAGGGCTTCCCAGTCCC 429377 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 | ||||| || || | | |||||||||||| |||| | | || | | | |||| Sbjct 429378 AGAGCGCGGATGGCTTGACATTCCACATGTCGAACTGAAGGATGCCCTGTGAGACCGGAC 429437 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327 |||| | |||| |||| ||| || | ||| | |||| || || | Sbjct 429438 TGCCCTCGTACGTCTTGTACGGGCCCTCCACCTTGGCAATATCGCTTGATGCGGTAAGAG 429497 Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCTCTC 153385 | | | ||| || || ||| ||| || || || || |||| || || | || Sbjct 429498 CAGCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAGCTCACGG--GCCTCGGGGGAGTC 429555 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | | ||||| || || || || || || || |||||||||| ||| || || || || Sbjct 429556 GAAAGGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGACACCAACACCAATCGG 429615 Query 153446 TCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCG 153500 |||||| | ||||||| ||||| || | |||| ||||| ||| ||| Sbjct 429616 TCGATGTCGCATGTTGCTGTTGTAGGCCTC---CTTGAC-TGGG-TAGTGGTTGACATCA 429670 Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 || || ||||| |||||||| || || || | || | | | | | | | ||| | Sbjct 429671 ATGATCTTGTTCAGGTTGCGGACGACGACCTGGGTAACCTCATGCAACTGTTGGAAGTTG 429730 Query 153561 TAG--GTCATT-TCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACA 153616 ||| || || || | | | ||||||| || || ||||||||| ||||| || || Sbjct 429731 TAGCAGTTGTTGTCATAGTCCACGTACGC--CGG--CAGGGCAATAGAGGCCAGGTTGCA 429786 Query 153617 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCA 153673 || || ||| || | | | | ||||| | |||||| | ||||||||| ||||| Sbjct 429787 AACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTTGAGCTGCG 429846 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG-TCTTTGAAGAGCA 153732 ||| |||| |||| ||| ||||| || || || | || | |||||| | |||| Sbjct 429847 G---ATGGTACCCAGGTTTTTCTGGTTGCTCTTTCGGTT-CGCGTGGTCTTTGTATAGCA 429902 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCT 153791 || | || ||| |||||| || | |||| ||| | || || | ||| || Sbjct 429903 TGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGG-CGTACCACAACTTCTGGGCC 429961 Query 153792 CGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCG 153851 || || ||| ||||||||| ||||||| |||||| || ||||||||| Sbjct 429962 TTCATGGTCTTGCGACCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCC 430021 Query 153852 TCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG 153911 || |||||||||||||| || || || |||| || || ||||| || | |||| ||| Sbjct 430022 TCACCGTAGCAGTCGGCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCAC---TCG 430078 Query 153912 TCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 || || ||| || |||||||||||| || | |||||| || | || || Sbjct 430079 CCGTTCTTCTCGACCCGCTTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCA 430138 Query 153969 CGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAG-CACGCTATAGAT 154024 || || | |||||| ||| | ||||| ||| | || || | | ||| Sbjct 430139 CGGGCTCGGATCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGAAACTCGA-AGAC 430194 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTG 154081 ||| |||||||| || |||| ||||| || | |||||| |||| || |||||||| Sbjct 430195 GTCTGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTG 430254 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 ||||| | || | ||||||| ||||| |||| |||||| | ||| | | || Sbjct 430255 GTCGACATATCGGGCAGTATTGTTAAAGACCCGCAACATGGGGGTGATGCCATTGGAAGT 430314 Query 154142 GCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAAT 154201 |||||| || | ||| | |||| ||| || | | || ||||| | ||| || Sbjct 430315 GCCGTTAGTACCAGCGATGTATGAGCCGGTGGCACGGATACGGTGGACGTTGAGGCCGAT 430374 Query 154202 GCC-GCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGA 154260 || ||||| | ||| || || || ||| ||||| ||||||||| || | Sbjct 430375 ACCTCCCGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAA 430433 Query 154261 TGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCG 154320 |||| || || | ||| | ||| ||||| ||| || || | | || || | Sbjct 430434 TGCTGTCCTCCTTCATATCGACGAGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAG 430493 Query 154321 CCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 | || | ||||| ||||| || || | || | | ||||| | |||||| | Sbjct 430494 CATTGAATAATGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCT 430553 Query 154381 CGATGGCGTCT-TCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGC 154439 ||||| | ||| |||| ||||| || ||||||| ||||| ||||||| |||||| Sbjct 430554 CGATGAC-TCTCTCGACGTCATCTCCCCAGATGCCGACAGCGACACGCATGATCATGTGT 430612 Query 154440 TGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTG 154499 || || || ||| ||||| || ||| | ||||| || ||| |||||||| ||| Sbjct 430613 TGTGGCCGCTCGACGACTTTACCGTCGAGCTTCAGCAGGTATGAGCGCTCGAGGGTCTTG 430672 Query 154500 TAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGA 154551 | ||||| || | ||| | ||||| | |||| | ||||||| |||| Sbjct 430673 AAGCCGAAGTATTGGTAGCCGAAATCGCGGTCATAGACAATGGCCGAGTCGA 430724 >seq1786 Length=271448 Score = 127 bits (140), Expect = 2e-24 Identities = 346/518 (67%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | ||||| ||||| | ||||| ||||||||||| || ||| || Sbjct 165255 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAG---GACCGCGAG 165311 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 |||| ||| |||| |||| ||||| ||| |||||||| | || || |||| Sbjct 165312 TCCACCTATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGC 165371 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 || || ||||||| | | || | | || | ||||| |||||||| ||| | Sbjct 165372 GCATTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCC 165431 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAA 52561 ||||| |||| || || || || || |||||||| ||||| || || || || | Sbjct 165432 AACGAACTGATCTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCC 165491 Query 52562 GACGCGCGTGA-CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGG 52620 || | | || |||| || | | | | | || ||| | ||| ||| ||||| | Sbjct 165492 CAC-CTCAAGAACCGACCAA--GCAAGCAG-CGCG-TCCAGGACATCATCACCGAGGCTG 165546 Query 52621 TGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | || ||||| ||||| ||||| || | || ||||| | || || ||||||||| Sbjct 165547 TCGCCATCGAGAAGGAATTTTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACT 165606 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 | | |||| |||||||||| ||||| || || || || |||| || |||| Sbjct 165607 CTAACCTCATGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCT-GGGC 165665 Query 52741 AGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAG 52799 | | | ||| | ||| | ||| || || || || ||| | ||||| || || | Sbjct 165666 AACGACAAGGTTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGT 165725 Query 52800 GGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||| || || Sbjct 165726 GGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 165763 >seq1808 Length=99283 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| | || | | | || ||||| ||||||||||||||| Sbjct 19779 CCACCACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 19838 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||||| || || | | |||| || ||||||||||| || || Sbjct 19839 AGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGG 19898 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | || |||| ||||| | Sbjct 19899 ATACCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCAATAGTATCGGAGGACTCAA 19956 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || || || || ||||| || |||||||||| Sbjct 19957 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCATGG 20007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || ||| || ||| || || || || || | Sbjct 19356 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCG 19415 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || || || ||||| || || || || || ||||| ||| | || | || | Sbjct 19416 AAAATGAGTCGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTGAC 19474 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||||| ||||||| ||| | || || || |||| || | Sbjct 19475 GTTGT-CAATCGTGTCCGATGACTCAACCTCGAGCGTAATAGTCTTCCCCGTCAAGGTCT 19533 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||||||||||||| || Sbjct 19534 TCACAAAAATCTGCATGCCT 19553 >seq1562 Length=24550 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 19380 CCACCTCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19439 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 19440 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19499 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 19500 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 19558 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || || || || || || || ||||||||| Sbjct 19559 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 19607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496247617583760