Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1786 140 3e-28 seq1808 109 5e-19 seq1287 93.3 4e-14 >seq1786 Length=271448 Score = 140 bits (154), Expect = 3e-28 Identities = 342/515 (66%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| |||||| || | || | ||| Sbjct 165258 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCCACC 165317 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 ||| | || || | || || ||| ||||||||| |||||||| ||| || Sbjct 165318 TATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTC 165377 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 || | || || | | || | || | ||||| ||||| || || |||||| Sbjct 165378 GCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAA 165437 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAACA-C 47305 || ||||| | || || || ||||||||| |||| |||||||| | || | || | Sbjct 165438 CTGATCTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTCCCACCTC 165497 Query 47306 TAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTC 47363 ||| ||| ||| ||| | ||| | || ||||| | |||| || ||| Sbjct 165498 AAGAACCGACCAAGCAAGCAGCGCGTCC--------AG-GACATCATCACCGAGGCTGTC 165548 Query 47364 GCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCG 47423 ||||| |||| ||| ||||| ||||||||||||| | | | || |||||| | Sbjct 165549 GCCATCGAGAAGGAATTTTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACTCT 165608 Query 47424 GAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTAT 47483 | | |||| |||||||||||||||||||||||||||| || || || | Sbjct 165609 AACCTCATGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAAC 165668 Query 47484 CCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543 |||| ||||| | | || || ||||| || ||| | ||||| || |||| ||| Sbjct 165669 GACAAGGTTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGC 165728 Query 47544 AAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||| ||||||||||| ||||| || || Sbjct 165729 AAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 165763 >seq1808 Length=99283 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || ||||| ||||| || | Sbjct 19323 CCACCACGAAGACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGAC 19382 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| | || | ||| ||||| || || || Sbjct 19383 AAAGTCCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGG 19442 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| || | ||||||| ||| || Sbjct 19443 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCAATCGTGTCCGATGACTCAAC 19501 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| || | || || || |||| || || ||||||||||||||| || Sbjct 19502 CTCGAGCGTAATAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCATGCCT 19553 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || ||||| ||||| || | || || || || ||||| |||||| Sbjct 19581 GTAGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGCCCGTCCTCAAGCTGCTTTCCA 19640 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || ||||| ||||||||||| ||| ||| ||| ||| Sbjct 19641 GCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTC 19700 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | | ||| || |||| ||| | || ||||| || ||||| Sbjct 19701 ACATTGTCGATAGTATCAGAAGACTCAACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTC 19760 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 19761 TTGACGAAGATCTGCAT 19777 >seq1287 Length=86926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 66493 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66552 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| || || || || |||||||||||| ||| || ||||| |||| || Sbjct 66553 AATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 66611 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || || | ||| | || ||||| ||||| || || || || Sbjct 66612 GATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 66671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486636019920