Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1562 154 2e-32 seq1287 129 7e-25 seq1808 109 6e-19 >seq1562 Length=24550 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||||| || ||||| || Sbjct 19392 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 19451 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| |||| |||||||||||| | || | || |||||| Sbjct 19452 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCTTCCTTG 19511 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| || ||||| || | |||||| Sbjct 19512 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATG 19571 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || || ||||| ||||| Sbjct 19572 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19606 >seq1287 Length=86926 Score = 129 bits (142), Expect = 7e-25 Identities = 140/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| | Sbjct 66491 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66550 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | | |||||||||| |||||| ||||| ||| | Sbjct 66551 TCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 66609 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || ||||| || | ||||| || ||||||||||| || || || Sbjct 66610 TCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 66669 Query 46583 AAG 46585 ||| Sbjct 66670 AAG 66672 >seq1808 Length=99283 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||| || || |||||||| || | ||| || | Sbjct 19334 ACGGAGCACCAAGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTCCGGCC 19393 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| || | || |||||||| | || | || |||||| Sbjct 19394 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGCTGGTCTGGTGGGATGCCCTCCTT 19453 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | |||||| || || || || | ||| | Sbjct 19454 GTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTGTCCGATGACTCAACCTCGAGCGTAA 19512 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||||| || || ||||| || ||||| Sbjct 19513 TAGTCTTCCCCGTCAAGGTCTTCACAAAAATCTGCAT 19549 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | |||| ||||| || || |||||||| || || || ||| |||| || Sbjct 19569 ACCAGGTGAAGTGTAGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGCCCGTCCTCA 19628 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||||||||||||||| | || | || |||||| ||| | Sbjct 19629 AGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 19688 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || || || || || || | || ||||| ||| Sbjct 19689 ATCTTCGACTTCACATTGTCGATAGTATCAGAAGACTCAACCTCGAGGGTAATGGTCTTG 19748 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 19749 CCAGTGAGAGTCTTGACGAAGATCTGCAT 19777 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| || || || | || ||||| |||||||| || || Sbjct 19815 TCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAG 19874 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||| ||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 19875 ATCAGGCGCTGTTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTT 19933 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || || || | |||||||| ||||| || || || || || Sbjct 19934 GTCAATAGTATCGGAGGACTCAACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTAC 19993 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 19994 GAAGATCTGCAT 20005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565221562961160