Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2022 230 3e-55 seq1643 159 4e-34 seq1552 86.0 8e-12 >seq2022 Length=14139 Score = 230 bits (254), Expect = 3e-55 Identities = 426/624 (68%), Gaps = 6/624 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || || || ||||| | ||||| || |||||||| Sbjct 11288 TCGAAGTCCTCGCCTCCCAGGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 11229 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | ||| ||||| || ||||||||||||||||| || || || ||| Sbjct 11228 TCCTCGATGGTCAGGAGCGACACATCGAAAGTACCACCACCCAGGTCGAAGATCAGGACG 11169 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 11168 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCTGTGGGCTCG 11109 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| ||| ||||||||||| | || || || || ||||| || Sbjct 11108 TTGATGATACGGAGAACGTTGAGGCCAGCAATGAGACCGGCGTCCTTGGTGGCTTGACGC 11049 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||||||||| || | ||| |||| |||| | ||||| Sbjct 11048 TGGGAGTCGTTGAAGTAGGCCGGGACGGTGATGACGGCGTTGTTGACGGTGCCGCCGAGG 10989 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| | ||||| || || ||||| |||| | Sbjct 10988 TAAGACTCGGCGGTCTCACGCATCTTGGTCAAGACCATGGAGGAGATCTCCTCAGGGGTG 10929 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || | || || || || ||||| || || |||| || | | || | Sbjct 10928 AAGGTCTTGGACTCGCCCTTGAACTCAACCTCGATGTTGGGCTTGCCACCCTTCTCGACG 10869 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||| | | | | ||||| ||| | ||||||| |||| ||||| | Sbjct 10868 AT---CTTGAAGGGAAAGTGCTTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTACGG 10812 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 10811 CCAATCAACCGCTTCGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTG 10752 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || | || || || || ||| | || || || || Sbjct 10751 GCGGCATCTCCGATCAGACGCTC---GGTGTCGGTGAATGCAACGAAGGAAGGTGTGGTC 10695 Query 8057 CGATTCCCTTGGTCGTTCGCAATA 8080 || || ||||||||||| |||||| Sbjct 10694 CGGTTTCCTTGGTCGTTTGCAATA 10671 >seq1643 Length=209494 Score = 159 bits (176), Expect = 4e-34 Identities = 359/539 (67%), Gaps = 3/539 (1%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || |||||||| || || ||||| || || | |||||| | || || | | |||| Sbjct 199771 AGATCCTCAAAGCGAGCGCGGGTGATTGAGATGGTGAAATCCTCTCCATCAAACAGCGAA 199712 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 ||||||||||| | ||| || ||| | || ||||| ||||||||||| || Sbjct 199711 TCAATTTCAATCAAAGCTTGAGCGCCACTAGAGAGAGTGCGCTTCGCGCGCTCACAGGCG 199652 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | | || || ||||| | | ||||| | ||| || || ||| || || Sbjct 199651 GTGCGAAGTCTTCGCAGAGCACGAGCATCGCCGGACAAATCCTTTTTGGTTTTCCGGTTG 199592 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || || | | |||| ||| || ||| |||||||||| || || | ||| || Sbjct 199591 AATTCCTTCTTGCAGTGCTCAAGAAGATTCGTGTCGAAATCTTGTCCGCCTAGGTGGGTG 199532 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || ||||| || ||||||| || | |||||| |||||| | | || |||||| Sbjct 199531 TCTCCCGCCGTGCTTTTGACTGTGAACACGGCTCCTTGAATGTTAAGGAGGGACACATCA 199472 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGTATCGTCGTCTTTGTTCTTA 7600 || ||||||||||| || || | || || ||||| | | || | ||||| Sbjct 199471 AAGGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTTGGACTTGTTGGAG 199412 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||| || ||||| || || || || || || || ||||| || ||| ||| Sbjct 199411 CCGAGACCGTAAGCAATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGG 199352 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || | || | | || || || || || || || || |||||| |||||||| ||| Sbjct 199351 CCGGAGATGGAACCAGCGTCCTTGGTGGCCTGACGCTGGTTATCGTTGAAGTAGGCAGGG 199292 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | ||| ||||| ||||| | | || || || || ||||| Sbjct 199291 ACGGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCCTTCAT 199233 >seq1552 Length=276526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 232/353 (66%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || ||||| || | ||| || || || || || ||| || ||||| | ||| Sbjct 18056 TCAAAGTCCTCACCTCCGAGGTGGGTGTCACCGGCAGTAGCTAGAACCTCAAATACACCC 17997 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | || || ||||| || ||||||||||| || || | | || | Sbjct 17996 TGGTCGATAGAGAGCAGGGAGACATCGAAGGTACCACCACCAAGATCGTAGACGATGA-- 17939 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | || | | | |||| || || || || |||||||| || ||||| || || Sbjct 17938 TTTG-ACGCTCACCCTCGGTCTTGTCCAGGCCATATGCGATAGCAGCGGCCGTGGGCTCG 17880 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||| || |||||| || || || | | ||||| || || || || || Sbjct 17879 TTGACGATACGGAGGACGTTCAGACCGGCGATGATACCGGCATCCTTGGTGGCCTGGCGC 17820 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| ||||| || ||||| || || || |||| ||||| |||| || || Sbjct 17819 TGGTTGTCGTTGAAGTACGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTCGCCCAGG 17760 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || | || ||||| ||| |||| ||| | || ||||| || Sbjct 17759 TAGTTCTCGGCCACCTCCTTCATCTTGCCCAGAATCATGGCGGAGATCTCCTC 17707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635113880981720