Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1963 158 1e-33 seq1786 98.7 1e-15 seq377 95.1 1e-14 >seq1963 Length=539952 Score = 158 bits (174), Expect = 1e-33 Identities = 1126/1782 (63%), Gaps = 55/1782 (3%) Strand=Plus/Plus Query 105558 TGAACTGAATTGG-GCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGT 105616 |||| ||||| || ||| || ||||| || ||||| |||||||| || |||||||| Sbjct 428862 TGAATTGAATGGGTGCG-GCAGCTGCCTGAGTGCGGAGGTAGTACATGCCAGTCTTGAGG 428920 Query 105617 CCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC-CAT 105675 || | ||||| || | |||||| | || |||| ||| | || || || ||| Sbjct 428921 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATGGACGG-CTCTCGCAT 428979 Query 105676 GAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCA 105733 | | || | ||| |||| |||| ||||| |||||| | || ||||| | Sbjct 428980 GTGGATGTTGAGTGACTGGGACT--GGTCGATGAATGCACCACGGTCAGCAGCCATCTGC 429037 Query 105734 ATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGG 105793 | | | | || ||||||||| || || ||| || |||||| ||| | ||| Sbjct 429038 ACAATAGTCCTCTGAGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATGTCAGCCGGG 429097 Query 105794 ATATCTGAGA-TATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 || ||| || | || || || ||||| || | || || | | |||||| ||| Sbjct 429098 ATG-CTGGGAATGTTCTGTATGGAACCATCCTCGGCGATGATACGGTTCTTCATGGCCTC 429156 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912 ||||| | || | || | | || ||| || |||||||| | ||||| Sbjct 429157 AGACCACAAGCCGAGCTCTGTCAAGTCCCTGAGAAGCCAAGGGTTGACAACCTGGAACTC 429216 Query 105913 TCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATT 105972 || ||||| | || | | |||||||| | ||||| || || ||||| || || || Sbjct 429217 GCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTT 429276 Query 105973 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 106032 |||| ||| || | |||||| || || |||||||| |||| || | ||||| || | Sbjct 429277 GCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGTAACAAGCTGTTGCGGAC 429336 Query 106033 ACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTT-GAGCTTGGTTTCAC 106091 ||| | |||||||| |||||||| | |||||||| || | | ||| || || Sbjct 429337 ACCGGTCTCCTTGATCTTGTCCTTGAGGGCTTCCCAGTCCCAGAGCGCGGATGGCTTGAC 429396 Query 106092 CTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCAT 106151 |||| |||| || || ||||| | || || || ||| ||||| | |||| | Sbjct 429397 ATTCC-ACATGTCGAACTGAAGGATGCCCTGTGAGACCGGACTGCCCTCGTACGTCTTGT 429455 Query 106152 A-GGAACCTTGGGCTTCAGCCAAT-TCACAGCTCGCCTCCAGGGATGCGTGATACATGGT 106209 | || ||| ||| | |||| || | || || | ||||| || || || Sbjct 429456 ACGGGCCCTCCACCTT--GGCAATATCGCTTGATGCGGTAAGAGCAGCGTGGTAGATAGT 429513 Query 106210 TTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTA-GCGGCAC 106267 || ||||| | |||| ||| ||| || || || ||| || || | | | Sbjct 429514 CTCGAAGATCTGCTTGTTCAGCTCACGGGCCTCGGGGGAGTCGAAAGGCATACGAAGGGC 429573 Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 || || |||| || ||||| || ||||| | |||||| |||| |||||||| || Sbjct 429574 CAAG--AACGCATCAGCAAGACCCTGGACACCAACACCAATCGGTCGATGTCGCATGTTG 429631 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || || || || || || || ||||||| ||| || || | Sbjct 429632 CTGTTGTAGGCCTCCTTGACTGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGG 429691 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 106447 || | || || | ||||| | | || | | | || | | |||| | Sbjct 429692 ACGACGACCTGGGTAACCTCATGCAACTGTTGGAAGTTGTA---GCAGTTGTTGTCATAG 429748 Query 106448 ---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 || ||| || ||||| || || |||| ||||||||||| |||||| | Sbjct 429749 TCCACGTACGCCGGCAGGGCAATAGAGGCCAGGTTGCAAACAGCGACCTCATCAGGGGCA 429808 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||| | || || || || | ||| || || || || |||| || || ||| Sbjct 429809 CAGTACTCGATGATCTCAGTGCAGAGGTTTGAGCTGCGGATGGTACCCAGGTTTTTCTGG 429868 Query 106565 TTACTCTTTTTGTTGCACG-CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 || |||||| ||| | || || ||||| |||||| |||| | || ||||| ||||| Sbjct 429869 TTGCTCTTTCGGTT-CGCGTGGTCTTTGTATAGCATGAAGGGGTTGCCAGTCTCGGTCTG 429927 Query 106624 TGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTC 106679 | || ||| || || | |||| || || | | || |||| ||| | || | Sbjct 429928 AGCCTCGAGGATGGCGTACCACAACTTCTGGGCCT----TCATGGTCTTGCGACCGCGGC 429983 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 ||||| ||||||||| |||||| || |||||||||||||| ||||| || | Sbjct 429984 CCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGTCGGCAAGTC 430043 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || || | || || | || | ||| | || || ||| ||||||||||||| Sbjct 430044 CAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCATGA 430103 Query 106800 AAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 | || || || ||||| || | | | ||| ||||| | || ||| || | || Sbjct 430104 ACAGATCGGGGATCCAGAGTGCAAGGAAA-AGATCACGGGCTCGGATCTCCTCCTTGCCG 430162 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||||| || | ||||| ||||| | || || ||||||||||||||||| |||| Sbjct 430163 TGGTTCTTGCGCAGGTCAAGAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGATA 430222 Query 106919 GCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 106971 |||| | || ||| | | ||||| || | ||||| || || || ||| Sbjct 430223 GCGAAGGCACCGGGACGCTTGTTGCCGCCC----TGGTCGACATATCGGGCAGTATTGTT 430278 Query 106972 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGA 107029 ||| || || | ||| || | || |||| || || || || || ||| || || Sbjct 430279 AAAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGA 430338 Query 107030 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 107089 | |||| | | | |||| || | || ||||| || ||| ||| ||||| Sbjct 430339 G--CCGGTGGCACGGATACGGTGGACGTTGAGGCCGATACCTCCCGCCATCTTGGAGATC 430396 Query 107090 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 107149 ||||| | | || || | ||||| || | || ||||||||| | ||| Sbjct 430397 ATGGCACAGGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACG 430456 Query 107150 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 107209 |||||||| |||| ||| || || || ||||||||||| | || || | ||| Sbjct 430457 AGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCG 430516 Query 107210 TGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTC 107268 || |||| | || | | ||||||| || ||| ||||| | ||| || | ||| || Sbjct 430517 TGGGTGAAGA-ACTTGTTGGACATCAGGTTGTACGTCTCGATGACTCTCTCGACGTCATC 430575 Query 107269 CCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || |||||||| || |||||||| | ||||| ||| || Sbjct 430576 TCCCCAGATGCCGACAGCGACACGCATGATCATGTGTTGTGG 430617 >seq1786 Length=271448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 292/445 (66%), Gaps = 4/445 (1%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 165763 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 165704 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||| || || || || || ||| || | |||| | ||||| || Sbjct 165703 AAGTCGAAGGGGTTGGACGACTTGTAAACCTTGTCGTTGCCCAGGGCGACC-AGGAGGCG 165645 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| | || ||||||| ||| | ||||||||| |||| ||| ||| Sbjct 165644 GTCGGCGACAAATTCGATGTACTGCTTCATGAGGTTAGAGTTCATGCCGAGGAGGGCACA 165585 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||| || || || | || | ||||| || | || ||||| | | |||| | || Sbjct 165584 TGGCAGAGCCTCGGTCAAAAATTCCTTCTCGATGGCGACAGCCTCGGTGATGATGTCCTG 165525 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAACTCCT 117283 || | | | |||| || | | || ||| ||| ||| || || Sbjct 165524 GACGCGCTGCTTGCTTGGTCGGTT-CTTGAGGTGGGAGAACAGCAGACAGGCGAAGTCGG 165466 Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343 ||| ||||||||||| || || || ||||| || |||||| ||||| |||||||| | Sbjct 165465 TGTGCAGACCCTCATCACGAGAGATCAGTTCGTTGGAGAAGGTCAGGCCAGGCATGAGCC 165406 Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 | |||||||| | ||| | || | ||||| ||| ||||||||||||||| || Sbjct 165405 CACGCTTCTTGAGCCAGAAGATGGAAGCGAATGCGCCGCTGAAGAAGATACCCTCGACGG 165346 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGC 117428 ||||| |||| || |||| ||| Sbjct 165345 CGGCAAAGGCAACCAGTCGCTGGGC 165321 >seq377 Length=268055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||||||||||||||| ||||| || || || | ||| || | || || Sbjct 88939 GGCATCAATCTCATCAATGAAAACAATGCAAGGGGCGTTCTTGCGTGCTTGCGCGAACAG 88998 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9489 || || || ||| ||| || ||||| |||||||| ||||| || | |||| | Sbjct 88999 GTCCCGCACTCTTGAGGCACCGACACCGACAAACATTTCCACGAACT------CGGATCC 89052 Query 9490 ATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | || || ||| || || |||||||| ||| |||| |||||| || ||||| Sbjct 89053 ACTGACGCTGAAGAACGGCACCCCCGATTCACCGGCAGTGGCCTTGGCGAGTAGTGTCTT 89112 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||| || ||||| || | | || |||||| || |||||||| ||||| Sbjct 89113 ACCAGTTCCTGGGGGCCCAGACAAGATGGCACCGCGAGGAATCTTTGCGCC 89163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963225946920