Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1963 221 2e-52 seq1786 163 5e-35 >seq1963 Length=539952 Score = 221 bits (244), Expect = 2e-52 Identities = 874/1346 (65%), Gaps = 57/1346 (4%) Strand=Plus/Plus Query 221354 GACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGAC 221413 || |||||||| || ||||||| || ||| || || | || | ||| ||| || Sbjct 429428 GAGACCGGACTGCCCTCGTACGTCTTGTACGGGCCCTCCACCTTGGCAATATCGCTTGA- 429486 Query 221414 TGCG-TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCT 221471 |||| | || |||||||||||||| ||||| |||||| |||||| || ||| || ||| Sbjct 429487 TGCGGTAAGAGCAGCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAG-CTCACGGGCCT 429545 Query 221472 CGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGA 221531 |||| || ||| |||||||| || | || | || || || ||||| || || | Sbjct 429546 CGGGGGAGTCGAAAGGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGACACCAA 429605 Query 221532 TACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTT 221589 ||| || || | |||| | ||||| | | | | || || | || || || ||| Sbjct 429606 CACCAATCGGTCGATGTCGCATGTTGCTGTTGTAGGC-CTCCTTG-ACTGGGTAGTGGTT 429663 Query 221590 GACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTG 221649 ||| || || | ||||| ||||| | || ||| | ||||| || || || Sbjct 429664 GACATCAATGATCTTGTTCAGGTTGCGGACGACGACCTGGGTAACCTCATGCAACTGTTG 429723 Query 221650 GTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | ||| | || | | ||| | | ||||| | || ||||||| Sbjct 429724 GAAGTTGTAG--CAGTT----GTTGTCATAG------TCCACGTACGCCGGCAGGGCAAT 429771 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||||||||| || || || ||||| || | |||| |||||||| || || Sbjct 429772 AGAGGCCAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCA 429831 Query 221770 GAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 |||||| ||||| |||||| ||||||| || || || ||| || || || Sbjct 429832 GAGGTTTGAGCTGCG---GATGGTACCCAGGTTTTTCTGGTTGCTCTTTCGGTTCGCGTG 429888 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 ||| ||||| ||||| ||||| ||||||||| ||||||| | || || || ||| Sbjct 429889 GTCTTTGTATAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCGTACCA 429948 Query 221887 GAGTTCTCTGGCGCT-CACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGG 221942 | | ||||| || || ||| | ||| || ||||| ||| || ||| | | Sbjct 429949 CAACT-TCTGGGCCTTCATGGTCTTGC-GACCGCGGCCCTC---CTTCTCGTACTTCTCG 430003 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || ||||| | |||||| |||||||| ||| | || || || ||| ||| | Sbjct 430004 TAGAGAGCCT--CAAACTCCTCACCGTAGCAGTCGGCAAGTCCAGGGCACTCATTGGGGC 430061 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||| || |||| | ||| | | ||||| || |||||| || || |||||||| | Sbjct 430062 ACATGAGGGTCCACTCGCCGTTCTTCTCGACCCGCTTCATGAACAGATCGGGGATCCAGA 430121 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || ||||| | || || ||||||| ||||| ||| || | ||| || | Sbjct 430122 GTGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAA 430181 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||| || | ||| |||||||| ||||| || |||| || | || ||||| |||| Sbjct 430182 GAAACTCGAAGACGTCTGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCT 430241 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||| ||||| || | ||| ||| | ||| |||| || | | || Sbjct 430242 TGTTGCCGCCCTGGTCGA-CATATCGGGCAGTATTGTTAAAGACCCGCAACATGGGGGTG 430300 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | || ||||| ||||| || || ||||| | ||| ||| | || ||| | Sbjct 430301 ATGCCATTGGAAGTGCCGTTAGTACCAGCGATGTATGAGCCGGTGGCAC---GGATAC-G 430356 Query 222302 GCAGAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGT 222357 | ||| | ||||||||| || || || ||||||||||| ||| ||||||| || Sbjct 430357 GTGGACGTTGAGGCCGATACCTCCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGCGT 430416 Query 222358 GTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 ||| ||||||||| || ||||||||| | | | || || || || |||| ||| Sbjct 430417 GTCGTAGATGCCCTCAATGCTGTCCTCCTTCATATCGACGAGGAAGCACGATGACAGCTG 430476 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | | || | | || || || | ||||| |||||| || ||| | | || Sbjct 430477 GGGCTGGGGAGTGCCAGCATTGAATAATGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGA 430536 Query 222478 CATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGC 222536 |||||| | ||||||||| | |||||| ||| || || ||| || | | | ||| Sbjct 430537 CATCAGGTTGTACGTCTCGATGACTCTCTCGACGTCATCTCCCCAGATGCCG-ACAGCGA 430595 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGG 222592 | |||| ||||| || |||| ||| || ||| || | ||||| |||||| Sbjct 430596 CACGCATGATCATGTGTTGTGGCCGCTCGAC--GACTTTACCGTCGAGCT--TCAGCAGG 430651 Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACC 222652 || || || || |||||||| || ||||| | | | | || || | | | | || Sbjct 430652 TATGAGCGCTCGAGGGTCTTGAAGCCGAAGTATTGGTAGCCGAAATCGCGGTCATAGACA 430711 Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||| | ||| | |||| |||||| Sbjct 430712 ATGGCCGAGTCGAACTCCTCCTTGTG 430737 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | |||||| | | |||||| | ||| || ||| | || Sbjct 429199 GTTGACAACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGG 429258 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||||||||| | ||| || |||||||| || |||| Sbjct 429259 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAG 429318 Query 221236 CAGCAGACTGTTGCG 221250 | || |||||||| Sbjct 429319 TAACAAGCTGTTGCG 429333 >seq1786 Length=271448 Score = 163 bits (180), Expect = 5e-35 Identities = 344/516 (67%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| ||||| ||||||||||| | || ||| | || Sbjct 165258 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCC-AC 165316 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | || | |||| ||||| |||||||| || || ||||| ||||| |||||||| | || Sbjct 165317 CTATGCCCAGCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATT 165376 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||||||||||||| || ||| |||||| || ||| ||| |||||||| Sbjct 165377 CGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGA 165436 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 || ||| | || |||||||| |||| || || ||||| ||||| | | | ||| Sbjct 165437 ACTGATCTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTGCTGTTCTC---CCA 165493 Query 26049 CTTGCTCCACAAAC--CTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105 | ||| | || | | |||| || |||| | ||||||| |||||||| | Sbjct 165494 C---CTCAAGAACCGACCAAGCAAGCAGCGCGTCCAGGACATCATCACCGAGGCTGTCGC 165550 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 ||||||||||| ||| | ||||||||| | Sbjct 165551 CATCGAGAAGGAATTTTTGACCGAGGCTCTGCCATGTGCCCTCCTCGGCATGAACTCTAA 165610 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGC 26225 ||||||| || ||||| || | ||| ||||||| || ||| | ||||| || Sbjct 165611 CCTCATGAAGCAGTACATCGAATTTGTCGCCGACCGCCTCCTGGTCGCCCTGGGCAACGA 165670 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 || | |||| || | ||||| |||||||| ||||| ||||| || | | || || Sbjct 165671 CAAGGTTTACAAGTCGTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAA 165730 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||| || ||| | ||||| ||||| || Sbjct 165731 GACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 165766 Score = 96.9 bits (106), Expect = 6e-15 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAAC-TCAAACTGGACCGCCGAAGAGATTGATCT 25535 || ||| | ||||||||||| || | || | || |||||| ||||| ||||||||||| Sbjct 164866 ATCTGGCAAATGTACAAGAA-GCACGAAGCTTCTTTCTGGACTGCCGAGGAGATTGATCT 164924 Query 25536 GGCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||||||| ||| |||| || ||| || | ||||| | | ||||| | Sbjct 164925 CTCCAAGGACATGCACGACTGGAGCAACCGTCTGACCGACGACGAACGGTATTTTGTGTC 164984 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT-GTGCGAGA 25651 || | | || ||||| || || || ||||| || || |||||||| || ||| ||| Sbjct 164985 CCACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTCGTG-GAGC 165043 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | |||| | | || || ||| | ||||| || |||||||| |||||||| Sbjct 165044 GGTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGAT 165098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928817132035520