Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1643 123 7e-23 seq1496 118 3e-21 seq1786 93.3 1e-13 >seq1643 Length=209494 Score = 123 bits (136), Expect = 7e-23 Identities = 194/276 (70%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || ||||| ||| || || || ||||| ||||| || | ||| ||||| Sbjct 155364 CGGCGCTGGATGTAACCGGTTTCAGCGGTCTTGACAGCGGTATCGATCAAACCCTCACGA 155305 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | ||| ||| ||| || | | ||||| | || Sbjct 155304 CCAGCCATGGCGTGGAAGAAGAACTCAGTGGGTGTTAGACCACGCAGGTAGGAGTTTTCG 155245 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 ||||| ||||| |||||||| || | ||| |||||||||||| |||| || | || | Sbjct 155244 ACGAAGCCACGAGCCTCGGGTGAGTAGTCATCCTTGGTAAAGTGAGGCAACGTTCGGTAC 155185 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC--CAGGCACGAAATCA 302830 | ||||| |||| || | |||||| || ||| |||||| || || | || ||| Sbjct 155184 TTGAAGCCGAATGGAATCCTCTTTCCCTCGACGACCTGCTGGCCAACAAGGGCG--GTCA 155127 Query 302831 TCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 | || || || || | | |||||||||||||| Sbjct 155126 TTTGGGAGATGTTGATGGAAGAGCCCTTGGAGCCAG 155091 >seq1496 Length=92147 Score = 118 bits (130), Expect = 3e-21 Identities = 185/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 251402 AGGCG--ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATA 251459 ||||| || || ||||| | | ||| | ||||| ||| | ||||| || | ||| | Sbjct 84121 AGGCGTCATGAGTCCACAAATCTCACAGATGTGGACCCTGAACGCATCTGACACCTCAAA 84062 Query 251460 TAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTC 251519 || || ||||| |||| || |||||||| | |||||| ||||||||||||||||| Sbjct 84061 TAAACGCTCCTTGAGGAAGGCAGCAGCACCGTGGGCAATCATGCAATCACGCTCCATTTC 84002 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAA 251578 |||||||| || |||||||| ||||| | |||||| | ||||| || || | |||| Sbjct 84001 TCCGAAACGCAGGCCACCATCTCGAGCACGACCCTCCACGGGCTGCCGCGTCATGATT-T 83943 Query 251579 CCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGT 251638 || || || || ||| || ||| || | ||||| || |||||||||| Sbjct 83942 GCACGGGGCCACGGGCACGGGCGTGGATCTTGTCGTCCACCATGTGGCGAAGACGCTGGT 83883 Query 251639 AGAATGCGGGACCGATGAAGA 251659 || ||| || |||| ||||| Sbjct 83882 AGTATGTCGGGCCGAAGAAGA 83862 >seq1786 Length=271448 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG-CGAGTTTTGCTACTCG 133509 ||||| | ||||||||| | || |||||||||||| ||| | | | | ||| || Sbjct 165270 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGAC-CGCGAGTCCACCTATGCCCAGCG 165328 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569 || ||||| ||||| | || ||||| || || ||||| || || ||| || || || Sbjct 165329 ACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTCGCTTCCATCTT 165388 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || |||||||| | | ||||| ||| || || |||||||| || || | Sbjct 165389 CTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCTGACCTTCTCCAACGAACTGATCTCTCG 165448 Query 133630 GGACGAGGCACTTCACACCGAATTTGCC 133657 || |||| || |||||||| || ||| Sbjct 165449 TGATGAGGGTCTGCACACCGACTTCGCC 165476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471772662189071