Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1808 109 5e-19 seq1562 100 3e-16 >seq1808 Length=99283 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| ||||| || || | | Sbjct 19777 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACCCTCGAGGTTGAGTCTTCT 19718 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || ||||| || || Sbjct 19717 GATACTATCGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 19658 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| ||||| | | | | | || || || ||| Sbjct 19657 CAGCGCTTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGGACCCTCTCGGACTACAAC 19598 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||||||| ||||| ||| |||| | || | || |||||| Sbjct 19597 ATTCAGAAGGAATCTACACTTCACCTGGTTCTCCGCCTCCGTGGAGGC 19550 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 20008 ACCATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCC 19949 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||| || | || | || || ||||| || ||||| || || || || || || Sbjct 19948 TCCGATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCTGAC 19889 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| || |||||||||| || || || || |||||| | | | | || || || Sbjct 19888 CAACAGCGCCTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACCCTCTCCGACTAC 19829 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| |||||||| || || ||| | || | || |||| || || Sbjct 19828 AACATTCAGAAGGAATCCACCCTTCACCTCGTTCTCCGTCTGCGTGGTGG 19779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || |||||||||||||| || || | | Sbjct 19549 ATGCAGATTTTTGTGAAGACCTTGACGGGGAAGACTATTACGCTCGAGGTTGAGTCATCG 19490 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 19489 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 19430 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || || || || || |||||||| || | | |||| || || ||| Sbjct 19429 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGGACTTTGTCTGACTACAAC 19370 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||||||||| | || | || || ||| Sbjct 19369 ATTCAGAAGGAGTCCACGCTGCACTTGGTGCTCCGTCTTCGTGGTGGC 19322 >seq1562 Length=24550 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | || Sbjct 19606 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 19547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 19546 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 19487 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 19486 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 19427 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| ||||| |||| |||| || || || Sbjct 19426 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGAGGTGGTGG 19377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449884198675240