Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1963 250 2e-61 seq1808 82.4 7e-11 >seq1963 Length=539952 Score = 250 bits (276), Expect = 2e-61 Identities = 1001/1543 (65%), Gaps = 51/1543 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || |||||||||| | || | ||| ||| | ||| Sbjct 429200 TTGACAACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGC 429259 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| ||| || ||||| ||||| Sbjct 429260 TCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTGGGCATTGGCGCCAGT 429319 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 ||||| || || | |||| | | ||| |||||||| | | || ||||||||| Sbjct 429320 AACAAGCTGTTGCGGACACCGGTCTCCTTGATCTTGTCCTTGAGGGCTTCCCAGTCCCAG 429379 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | || || ||| | || |||||||||||| |||| || | || | | | |||||| Sbjct 429380 AGCGCGGATGGCTTGACATTCCACATGTCGAACTGAAGGATGCCCTGTGAGACCGGACTG 429439 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG---AGC 147189 || || |||| |||| || || | | | |||| | ||||| || || Sbjct 429440 CCCTCGTACGTCTTGTACGGGCCCTC-CACCTTGGCAAT--ATCGCTTGATGCGGTAAGA 429496 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCT 147247 || | | ||| || || ||| ||| || ||||| || |||| || || | | Sbjct 429497 GCAGCGTGGTAGATAGTCTCGAAGATCTGCTTGTTCAGCTCACGG--GCCTCGGGGGAGT 429554 Query 147248 CGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 || |||||||||| || || || ||||| || | |||||||| ||| || || || | Sbjct 429555 CGAAAGGCATACGAAGGGCCAAGAACGCATCAGCAAGACCCTGGACACCAACACCAATCG 429614 Query 147308 GTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATA 147366 ||||||| ||||||| | || ||| | | || ||||||||| |||||| Sbjct 429615 GTCGATGTCGCATGTTGCTGTTGTAGGC-CTCCTTGACTGGGTAGTGGTTGACATCAATG 429673 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425 |||||||| ||||| || || || || | || | | | | | ||| | || Sbjct 429674 ATCTTGTTCAGGTTGCGGACGACGACCTGGGTAACCTCATGCAACTGTTGGAAGTTGTAG 429733 Query 147426 -AG-TCCCGTCTTCG-ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 || | ||| | | ||||||||| || || ||| ||||| ||||| ||||| || Sbjct 429734 CAGTTGTTGTCATAGTCCACGTACGC--CGG--CAGGGCAATAGAGGCCAGGTTGCAAAC 429789 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTT 147539 || ||| || | | | | ||||| | ||| || | ||| ||||| ||||| Sbjct 429790 AGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTTGAGCTGC---G 429846 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACG-CGTCTTTGAAGAGCATGT 147598 ||| |||| |||| ||| ||||| || || || | || ||||||| | |||||| Sbjct 429847 GATGGTACCCAGGTTTTTCTGGTTGCTCTTTCGGTT-CGCGTGGTCTTTGTATAGCATGA 429905 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGC 147657 | || ||| |||||| || | || | ||| | || || | ||| || | Sbjct 429906 AGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGAT-GGCGTACCACAACTTCTGGGCCTTC 429964 Query 147658 ACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 | || ||| ||||||||| || |||||| |||||| | ||||||||| || Sbjct 429965 ATGGTCTTGCGACCGCGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCAAACTCCTCA 430024 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 |||||||| |||||||| || || |||| || || ||||| || | |||| | ||| | Sbjct 430025 CCGTAGCAGTCGGCAAGTCCAGGGCACTCATTGGGGCACATGAGGGTCCACTCGCCGTTC 430084 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | || || ||| |||||||| || | ||| || || | |||||| || ||| Sbjct 430085 TTCTCGACCCGCTTCATGAACAGATCGGGGATCCAGAGTGCAAGGAAAAGATCACGGGCT 430144 Query 147838 TTGCAATCCTC---GGCGCCCATGTTGCGTTTCAAATTAAG-CACGCTATAGATGTCGGC 147893 | ||||| | || | ||||| || | ||| || | | ||| ||| || Sbjct 430145 CGGATCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGAAACTCGA-AGACGTCTGC 430200 Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950 |||||| || |||| ||||| || | ||||| |||| || |||||||||||||| Sbjct 430201 GTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCGCCCTGGTCGAC 430260 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 || || | | |||||||| || |||| |||||| | ||| | | ||||||||| Sbjct 430261 ATATCGGGCAGTATTGTTAAAGACCCGCAACATGGGGGTGATGCCATTGGAAGTGCCGTT 430320 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCC-GC 148069 || | ||| | |||| ||| || | ||| ||||| | ||| || || | Sbjct 430321 AGTACCAGCGATGTATGAGCCGGTGGCACGGATACGGTGGACGTTGAGGCCGATACCTCC 430380 Query 148070 CGCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGC 148126 |||| | ||| || |||||| | | | | |||| ||||||||| || |||| Sbjct 430381 CGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGC-GTGTC--GTAGATGCCCTCAATGC 430436 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186 |||| | || | | | | || ||||| ||| || || | || || || Sbjct 430437 TGTCCTCCTTCATATCGACGAGGAAGCACGATGACAGCTGGGGCTGGGGAGTGCCAGCAT 430496 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 ||| | ||||| ||||| || || || || | ||||| | |||||||| | Sbjct 430497 TGAATAATGTGGGCGAGGCGTGGGTGAAGAACTTGTTGGACATCAGGTTGTACGTCTCGA 430556 Query 148247 TAGCGTCT-TCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGT 148305 | | ||| |||| ||| || || ||||| | ||||| ||||||| |||||| ||| Sbjct 430557 T-GACTCTCTCGACGTCATCTCCCCAGATGCCGACAGCGACACGCATGATCATGTGTTGT 430615 Query 148306 GGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 || || ||| | |||| | || || ||| || || ||| |||||||| ||| | Sbjct 430616 GGCCGCTCGACGACTTTACCGTCGAGCTTCAGCAGGTATGAGCGCTCGAGGGTCTTGAAG 430675 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||||| | ||| | ||||| | || || | ||||||| Sbjct 430676 CCGAAGTATTGGTAGCCGAAATCGCGGTCATAGACAATGGCCG 430718 >seq1808 Length=99283 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||| | || | | | || || || ||||||||||||||| | ||| Sbjct 19784 ACGCAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGT 19843 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| ||||| || || || | | |||| || |||||||| || || || || || Sbjct 19844 ACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCAGGGGGGATACC 19903 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || | | || | |||||||| | ||| || |||| Sbjct 19904 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGACTCAACCTCGAG 19963 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || |||| ||| ||||||||| Sbjct 19964 AGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCATG 20006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597002943880