Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20ampelina_20[genbank_20GCA_5F001006365.1_202015-05-13] 2,383 sequences; 47,325,858 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1567 190 3e-42 seq1786 136 6e-26 seq1963 132 7e-25 seq1144 87.8 3e-11 >seq1567 Length=46990 Score = 190 bits (210), Expect = 3e-42 Identities = 351/515 (68%), Gaps = 0/515 (0%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||| ||||| ||| |||| |||||| | ||| ||| |||| || |||||| Sbjct 41256 ACCTTCTCGGCCTCGATGATCTGCATCAGGCGCTTGACGACCTGGCCGTCCGTCAGGCGC 41197 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 | | |||||||| || || || |||||| | |||||||| | | ||| |||| Sbjct 41196 GCGTACCGCAGGATCGCGCACCGCGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTG 41137 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 || || | ||| || |||||||| |||| | | ||||| || ||| || ||||| Sbjct 41136 CATGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTGCGCCGCAGCGCCTGC 41077 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 || || ||| ||| | || |||||||||||| ||||||| |||||||||||| ||| | Sbjct 41076 TGCGCGCCCGACGTCATGCTGTCGGCCTCGTCCAGGATGACGATCTTGTGGCGGCCGGCC 41017 Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCG 333109 ||||| ||| | ||| ||| | ||||| |||||||| ||||| | ||| Sbjct 41016 GGCAGTGTGACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTGCGCACCACGTCGATGCCC 40957 Query 333110 CGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACG 333169 ||||||||||| |||||||| || || || ||||| | | ||| | || | || Sbjct 40956 CGCTCGTCCGAGGCGTTGAGCTCCAGGACAGCCTCCTTGTAGGCGTCGCCGAGCAGCTGC 40897 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGG 333229 ||||||||||| | ||| || ||||| || |||| ||| || | | || Sbjct 40896 CGCGCCAGGCAGAGCACGCTGGTCGTCTTTCCGATGCCTGGCATGCCGCTGATGATGACA 40837 Query 333230 TTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCG 333289 | ||||||||||| || || | ||||||| | | || | |||| ||| Sbjct 40836 TGCGGCATGTTGCCATCTTTTGCTATGATCTTGAGGCGCTCGATGGTCTCTACGTTTCCG 40777 Query 333290 ACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324 || ||||||||||| | || |||||||| || || Sbjct 40776 ACGATGTCGTCGAGGAAGATGGGGCGGTATTTCTC 40742 >seq1786 Length=271448 Score = 136 bits (150), Expect = 6e-26 Identities = 185/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||| |||| |||||||| || ||| | | |||| | ||||| || Sbjct 165531 ATCATCACCGAGGCTGTCGCCATCGAGAAGGAATTTTTGACCGAGGCTCTGCCATGTGCC 165590 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||| | | | |||||| |||||||| ||| |||||||||||||||| Sbjct 165591 CTCCTCGGCATGAACTCTAAC-CTCATGAAGCAGTACATCGAA-TTTGTCGCCGACCGCC 165648 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| ||| | || ||||||| ||| | ||| Sbjct 165649 TCCTGGTCGCCCTGGGCAAC-GACAAGGTTTACAAGTCGTCCAACCCCTTCGACTTCATG 165707 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || || || || ||| Sbjct 165708 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 165767 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| ||||||| Sbjct 165768 AAGGCTGGCGTCA 165780 Score = 125 bits (138), Expect = 1e-22 Identities = 234/336 (70%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||| ||| || || || ||||| ||||||||| | || | Sbjct 164865 GATCTGGCAAATGTAC-AAGAAGCACGAAGCTTCTTTCTGGACTGCCGAGGAGATTGATC 164923 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | |||| | | ||||| || |||| ||||||||| || |||| | Sbjct 164924 TCTCCAAGGACATGCACGACTGGAGCAACCGTCTGACCGACGACGAACGGTATTTTGTGT 164983 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||||||||| || ||| || ||||| ||||| ||||||||| | | Sbjct 164984 CCCACATCCTCGCCTTCTT-CGCTGCTTCAGATGGAATCGTCAACGAGAACCTCGTGGAG 165042 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 165043 CGGTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 165102 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || || ||||| ||||| || || |||||| ||||||| || Sbjct 165103 ATGGAGAACATCCACTCAGAGACATACTCTCTCCTCATTGATACCTACATCAAGGAGCCC 165162 Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 | | || | || |||||| | ||||| ||||| Sbjct 165163 GCCCAG-CGCACGCACCTCCTCAATGCCATTGACAC 165197 Score = 98.7 bits (108), Expect = 1e-14 Identities = 118/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180 || |||||||||||||| ||||||||||| | ||| || || || || |||| | Sbjct 165270 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCA---GGACCGCGAGTCCAC-CTATGCCCA 165325 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || || | ||||||||| |||||||| ||||| ||| ||| ||| |||| Sbjct 165326 GCGACTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGCGCATTCGCTTCCAT 165385 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || |||||||| || || Sbjct 165386 CTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGCCT 165421 >seq1963 Length=539952 Score = 132 bits (146), Expect = 7e-25 Identities = 336/505 (67%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| ||||| | ||||| | | | ||| || || |||||| ||||| Sbjct 430737 CACAAGGAGGAGTTCGACTCGGCCATTGTCTATGACCGCGATTTCGGCTACCAATACTTC 430678 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | |||| | || || |||||| | ||| || || || ||||||||||| Sbjct 430677 GGCTTCAAGACCCTCGAGCGCTCATACCTG-CTGAAGCTCGACGGTAAAGTCGTCGAGCG 430619 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 ||| || | ||| ||||||||||||| | ||| | |||| | |||||||| | Sbjct 430618 GCCACAACACATGATCATGCGTGTCGCTGTCGGCA--TCTGGGGA-GATGACGTCGAGAG 430562 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGC 259920 | | ||| |||| | |||| ||||| | |||| |||||| || Sbjct 430561 AGTCATCGAG-ACGTACA----ACCTG-------ATGTCCAACAAGTTCTTCACCCACGC 430514 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 ||||||| | || ||||| ||||| || | || ||| || |||||||| || | Sbjct 430513 CTCGCCCACATTATTCAATGCTGGCACTCCCCAGCCCCAGCTGTCATCGTGCTTCCTCGT 430454 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 || ||||||| || || ||||||||||| |||||||||||| || || | || Sbjct 430453 CGATATGAAGGAGGACAGCATTGAGGGCATCTACGACACGCTCAAGACCTGTGCCATGAT 430394 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| || || ||||| | || ||| | || ||| | ||| | || Sbjct 430393 CTCCAAGATGGCGGGAGGTATCGGCCTCAACGTCCACCGTATCCGTGCCACCGGCTCATA 430334 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || || || |||||| ||||| ||| | |||||| | || || |||||| | Sbjct 430333 CATCGCTGGTACTAACGGCACTTCCAATGGCATCACCCCCATGTTGCGGGTCTTTAACAA 430274 Query 260161 CACGGCGCGCTACGTCGACCAGTGC 260185 || || || || ||||||||| || Sbjct 430273 TACTGCCCGATATGTCGACCAGGGC 430249 >seq1144 Length=39833 Score = 87.8 bits (96), Expect = 3e-11 Identities = 175/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 2133382 TGGCGCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATG-TGACG 2133440 ||||||||||| || |||| |||| || || | ||| |||||||||| | ||| Sbjct 9295 TGGCGCGCATGTGCGGCGCCGTCCGGACGATACTCGAATGCGTGGGCGAGGACGCCGAC- 9353 Query 2133441 CGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGC 2133500 ||||||||||| |||| ||| || ||| |||||||||||| || ||| Sbjct 9354 CGCGAGGGCCTGCTGGCCACCCCGGAGCGGTACGCCAAGGCCATGCTGTTCTTCACCAAG 9413 Query 2133501 GGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGA 2133559 || | | ||| || | || |||| |||| ||||||| |||| || |||| | Sbjct 9414 GGGTACCAGCA-GAACGTGCGCGACATCGTCAACGGCGCCATCTTCGAGGAGGGCCACAA 9472 Query 2133560 CGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCC 2133619 ||||||||| | || || || || | || |||||||||||||||||| |||| Sbjct 9473 CGAGATGGTCATCGTCAAGGACATCGAGGTCTTTAGCATGTGCGAGCACCACCTCGTGCC 9532 Query 2133620 CTTTATCGGCAAGG 2133633 || | |||||||| Sbjct 9533 GTTCACCGGCAAGG 9546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177581355270046